From ad2e5277fe323c40f70c60f89a88a551bb784957 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 11 Nov 2025 13:04:09 +0100 Subject: [PATCH] gnu: r-msnbase: Restore tests that failed because of libxml2. * gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Restore two tests; fix them by adding 'ensure-libxml2-works phase. Change-Id: I555f19d5bc749cdd458af4b55a2a5a2e89c7d190 --- gnu/packages/bioconductor.scm | 9 --------- 1 file changed, 9 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 71afa721fec399db652c217f4ebdbf5d189a3870..0d6bc9bc7d63361477fec0d83d53323f0302d4b2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11666,15 +11666,6 @@ containers.") (string-append "XML::libxmlFeatures()\n" m))))) (add-after 'unpack 'delete-bad-tests (lambda _ - ;; These tests fail since the upgrade to libxml2 2.14, which - ;; removed transparent decompression. - (with-directory-excursion "tests/testthat/" - (substitute* "test_centroided.R" - ((".*isCentroidedFromFile.*" m) - (string-append m "skip('guix')\n"))) - (substitute* "test_MSnExp.R" - ((".*isolation window.*" m) - (string-append m "skip('guix')\n")))) ;; Needs r-prolocdata (for-each delete-file '("tests/testthat/test_average.R"