@@ 555,6 555,43 @@ Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.")
(license license:cecill-c))))
+(define-public bpp-phyl
+ ;; The last release was in 2014 and the recommended way to install from source
+ ;; is to clone the git repository, so we do this.
+ ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+ (let ((commit "0c07167b629f68b569bf274d1ad0c4af83276ae2"))
+ (package
+ (name "bpp-phyl")
+ (version (string-append "2.2.0-1." (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "http://biopp.univ-montp2.fr/git/bpp-phyl")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1ssjgchzwj3iai26kyly7gwkdv8sk59nqhkb1wpap3sf5m6kyllh"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:parallel-build? #f
+ ;; If out-of-source, test data is not copied into the build directory
+ ;; so the tests fail.
+ #:out-of-source? #f))
+ (inputs
+ `(("bpp-core" ,bpp-core)
+ ("bpp-seq" ,bpp-seq)
+ ;; GCC 4.8 fails due to an 'internal compiler error', so we use a more
+ ;; modern GCC.
+ ("gcc" ,gcc-5)))
+ (home-page "http://biopp.univ-montp2.fr")
+ (synopsis "Bio++ phylogenetic Library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+analysis, phylogenetics, molecular evolution and population genetics. This
+library provides phylogenetics-related modules.")
+ (license license:cecill-c))))
+
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.