@@ 555,6 555,40 @@ Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.")
(license license:cecill-c))))
+(define-public bpp-seq
+ ;; The last release was in 2014 and the recommended way to install from source
+ ;; is to clone the git repository, so we do this.
+ ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+ (let ((commit "6cfa07965ce152e5598a89df2fa80a75973bfa33"))
+ (package
+ (name "bpp-seq")
+ (version (string-append "2.2.0-1." (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "http://biopp.univ-montp2.fr/git/bpp-seq")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1nys5jq7jqvdg40d91wsmj3q2yzy4276cp7sp44n67p468f27zf2"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:parallel-build? #f
+ ;; If out-of-source, test data is not copied into the build directory
+ ;; so the tests fail.
+ #:out-of-source? #f))
+ (inputs
+ `(("bpp-core" ,bpp-core)
+ ("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'.
+ (home-page "http://biopp.univ-montp2.fr")
+ (synopsis "Bio++ sequence library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+analysis, phylogenetics, molecular evolution and population genetics. This
+library provides sequence-related modules.")
+ (license license:cecill-c))))
+
(define-public blast+
(package
(name "blast+")