@@ 1786,6 1786,59 @@ naming and share the same rich and consistent \"Vector API\" as much as
possible.")
(license license:artistic2.0)))
+(define-public r-isoformswitchanalyzer
+ (package
+ (name "r-isoformswitchanalyzer")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "IsoformSwitchAnalyzeR" version))
+ (sha256
+ (base32 "14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf"))))
+ (properties `((upstream-name . "IsoformSwitchAnalyzeR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-dbi" ,r-dbi)
+ ("r-dexseq" ,r-dexseq)
+ ("r-dplyr" ,r-dplyr)
+ ("r-drimseq" ,r-drimseq)
+ ("r-edger" ,r-edger)
+ ("r-futile-logger" ,r-futile-logger)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-iranges" ,r-iranges)
+ ("r-limma" ,r-limma)
+ ("r-magrittr" ,r-magrittr)
+ ("r-plyr" ,r-plyr)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rcurl" ,r-rcurl)
+ ("r-readr" ,r-readr)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-tximeta" ,r-tximeta)
+ ("r-tximport" ,r-tximport)
+ ("r-venndiagram" ,r-venndiagram)
+ ("r-xvector" ,r-xvector)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/IsoformSwitchAnalyzeR/")
+ (synopsis "Analyze alternative splicing in RNA-seq data")
+ (description
+ "This is a package for the analysis of alternative splicing and isoform
+switches with predicted functional consequences (e.g. gain/loss of protein
+domains etc.) from quantification of all types of RNASeq by tools such as
+Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
+ (license license:gpl2+)))
+
;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
(define-public r-absfiltergsea
(package