@@ 1668,6 1668,41 @@ spent loading the full derfinder package when running the F-statistics
calculation in parallel.")
(license license:artistic2.0)))
+(define-public r-drimseq
+ (package
+ (name "r-drimseq")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DRIMSeq" version))
+ (sha256
+ (base32 "0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02"))))
+ (properties `((upstream-name . "DRIMSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-edger" ,r-edger)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iranges" ,r-iranges)
+ ("r-limma" ,r-limma)
+ ("r-mass" ,r-mass)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/DRIMSeq")
+ (synopsis "Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq")
+ (description
+ "The package provides two frameworks. One for the differential
+transcript usage analysis between different conditions and one for the tuQTL
+analysis. Both are based on modeling the counts of genomic features (i.e.,
+transcripts) with the Dirichlet-multinomial distribution. The package also
+makes available functions for visualization and exploration of the data and
+results.")
+ (license license:gpl3+)))
+
(define-public r-bluster
(package
(name "r-bluster")