From 4812369fa52b48c390bc411b4463b77fd6a3ccb9 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 25 Nov 2025 22:31:35 +0100 Subject: [PATCH] gnu: r-msigdbr: Enable tests. The CRAN tarball appears to have been replaced in place shortly after the initial upload. * gnu/packages/cran.scm (r-msigdbr)[source]: Update hash. [arguments]: Remove phase 'disable-bad-tests. Change-Id: Iff1678e3802178ff344fc7efdee20f897df08f03 --- gnu/packages/cran.scm | 21 +-------------------- 1 file changed, 1 insertion(+), 20 deletions(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index acf3de0c9faecbc4e4c27e704dd19bed27318e5e..a28a51d831152e8aee3fc9cd348ff71d65b5692e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -37560,27 +37560,8 @@ compiled by the HGNC Comparison of Orthology Predictions (HCOP).") (uri (cran-uri "msigdbr" version)) (sha256 (base32 - "00nhzpkxhkbn01v1xwngqxrlcg37f3m7xlkd3b88lsr2l2fr5596")))) + "19m3588nw8nl1d5v2394i79hfrghcaylblqvbrfg5w9dfiw5pxbz")))) (build-system r-build-system) - (arguments - (list - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'disable-bad-tests - (lambda _ - ;; These tests attempt to download a data file. - (substitute* "tests/testthat/test-msigdbr-collections.R" - ((".*msigdbr_collections\\(\\).*" m) - (string-append m "skip('skip');\n"))) - (substitute* "tests/testthat/test-msigdbr.R" - ((".*collections and subcollections.*" m) - (string-append m "skip('skip');\n")) - ((".*msigdbr\\(\\) subcollection partial match.*" m) - (string-append m "skip('skip');\n")) - ((".*deprecated parameters.*" m) - (string-append m "skip('skip');\n")) - ((".*species.*" m) - (string-append m "skip('skip');\n")))))))) (propagated-inputs (list r-assertthat r-babelgene