~ruther/ctu-fee-eoa

ref: 98eb8ce716f5a14f77ac81fae1633bfadb0fae64 ctu-fee-eoa/codes/tsp_hw01/src/tsp.rs -rw-r--r-- 15.9 KiB
98eb8ce7 — Rutherther fix(tsp): reverse properly in reverse subsequence perturbatio a month ago
                                                                                
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
use std::{convert::Infallible, marker::PhantomData};

use eoa_lib::{crossover::Crossover, fitness::FitnessFunction, initializer::Initializer, perturbation::PerturbationOperator, replacement::Population};
use itertools::Itertools;
use nalgebra::{allocator::Allocator, distance, Const, DefaultAllocator, Dim, Dyn, OMatrix, OVector, Point, U1};
use plotters::prelude::*;
use rand::{seq::{IteratorRandom, SliceRandom}, Rng, RngCore};

use crate::graph::Edge;

#[derive(PartialEq, Clone, Debug)]
pub struct TSPCity {
    point: Point<f64, 2>
}

#[derive(PartialEq, Clone, Debug)]
pub struct NodePermutation<D: Dim>
where
    DefaultAllocator: Allocator<D>
{
    permutation: OVector<usize, D>
}

/// An instance of TSP, a fully connected graph
/// with cities that connect to each other.
/// The D parameter represents the number of cities.
#[derive(PartialEq, Clone, Debug)]
pub struct TSPInstance<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>
{
    cities: Vec<TSPCity>,
    distances: OMatrix<f64, D, D>
}

impl TSPInstance<Dyn>
where
{
    pub fn new_dyn(cities: Vec<(f64, f64)>) -> Self {
        let dim = Dyn(cities.len());

        let cities = OMatrix::<f64, Dyn, Const<2>>::from_fn_generic(dim, Const::<2>, |i, j| if j == 0 { cities[i].0 } else { cities[i].1 });
        TSPInstance::new(cities)
    }
}

impl<const D: usize> TSPInstance<Const<D>>
where
{
    pub fn new_const(cities: Vec<(f64, f64)>) -> Self {
        let cities = OMatrix::<f64, Const<D>, Const<2>>::from_fn(|i, j| if j == 0 { cities[i].0 } else { cities[i].1 });
        TSPInstance::new(cities)
    }
}

impl<D> TSPInstance<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
    DefaultAllocator: Allocator<D, Const<2>>,
{
    pub fn new(cities: OMatrix<f64, D, Const<2>>) -> Self {
        let dim = cities.shape_generic().0;

        let cities = cities.row_iter()
                .map(|position|
                     TSPCity { point: Point::<f64, 2>::new(position[0], position[1])  }
                )
                .collect::<Vec<_>>();

        let distances = OMatrix::from_fn_generic(
            dim,
            dim,
            |i, j| distance(&cities[i].point, &cities[j].point)
        );

        Self {
            cities,
            distances
        }
    }
}

impl<D> TSPInstance<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
{
    pub fn dimension(&self) -> D {
        self.distances.shape_generic().0
    }

    pub fn verify_solution(solution: &NodePermutation<D>) -> bool {
        let mut seen_vertices = OVector::from_element_generic(
            solution.permutation.shape_generic().0,
            solution.permutation.shape_generic().1,
            false
        );

        for &vertex in solution.permutation.iter() {
            // This vertex index is out of bounds
            if vertex >= solution.permutation.len() {
                return false;
            }

            // A node is repeating
            if seen_vertices[vertex] {
                return false;
            }

            seen_vertices[vertex] = true;
        }

        true
    }

    pub fn solution_cost(&self, solution: &NodePermutation<D>) -> f64 {
        solution.permutation
            .iter()
            .circular_tuple_windows()
            .map(|(&node1, &node2): (&usize, &usize)| self.distances(node1, node2))
            .sum()
    }

    pub fn distances(&self, city_a: usize, city_b: usize) -> f64 {
        self.distances[(city_a, city_b)]
    }

    fn plot_internal(&self, solution: Option<&NodePermutation<D>>, filename: &str) -> Result<(), Box<dyn std::error::Error>> {
        let root = BitMapBackend::new(filename, (800, 600)).into_drawing_area();
        root.fill(&WHITE)?;

        let x_coords: Vec<f64> = self.cities.iter().map(|city| city.point.x).collect();
        let y_coords: Vec<f64> = self.cities.iter().map(|city| city.point.y).collect();

        let x_min = x_coords.iter().fold(f64::INFINITY, |a, &b| a.min(b));
        let x_max = x_coords.iter().fold(f64::NEG_INFINITY, |a, &b| a.max(b));
        let y_min = y_coords.iter().fold(f64::INFINITY, |a, &b| a.min(b));
        let y_max = y_coords.iter().fold(f64::NEG_INFINITY, |a, &b| a.max(b));

        let x_padding = (x_max - x_min) * 0.1;
        let y_padding = (y_max - y_min) * 0.1;

        let x_range = (x_min - x_padding)..(x_max + x_padding);
        let y_range = (y_min - y_padding)..(y_max + y_padding);

        let title = if let Some(sol) = solution {
            format!("TSP Solution (Cost: {:.2})", self.solution_cost(sol))
        } else {
            "TSP Instance".to_string()
        };

        let mut chart = ChartBuilder::on(&root)
            .caption(&title, ("sans-serif", 40))
            .margin(10)
            .x_label_area_size(40)
            .y_label_area_size(40)
            .build_cartesian_2d(x_range, y_range)?;

        chart.configure_mesh().draw()?;

        if let Some(sol) = solution {
            chart.draw_series(
                sol.permutation.iter().circular_tuple_windows().map(|(&city1_idx, &city2_idx)| {
                    let city1 = &self.cities[city1_idx];
                    let city2 = &self.cities[city2_idx];
                    PathElement::new(vec![(city1.point.x, city1.point.y), (city2.point.x, city2.point.y)], BLUE)
                })
            )?;
        }

        chart.draw_series(
            self.cities.iter().map(|city| {
                Circle::new((city.point.x, city.point.y), 5, RED.filled())
            })
        )?;

        chart.draw_series(
            self.cities.iter().enumerate().map(|(i, city)| {
                Text::new(format!("{}", i), (city.point.x + 0.1, city.point.y + 0.1), ("sans-serif", 15))
            })
        )?;

        root.present()?;
        Ok(())
    }

    pub fn plot(&self, filename: &str) -> Result<(), Box<dyn std::error::Error>> {
        self.plot_internal(None, filename)
    }

    pub fn draw_solution(&self, solution: &NodePermutation<D>, filename: &str) -> Result<(), Box<dyn std::error::Error>> {
        self.plot_internal(Some(solution), filename)
    }
}

impl<D> FitnessFunction for TSPInstance<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
{
    type In = NodePermutation<D>;
    type Out = f64;
    type Err = Infallible;

    fn fit(self: &Self, inp: &Self::In) -> Result<Self::Out, Self::Err> {
        Ok(self.solution_cost(inp))
    }
}

pub struct TSPRandomInitializer<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
{
    _phantom: PhantomData<D>
}

impl<D> TSPRandomInitializer<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
{
    pub fn new() -> Self {
        Self { _phantom: PhantomData }
    }
}

impl<D> Initializer<D, NodePermutation<D>> for TSPRandomInitializer<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
{
    fn initialize_single(&self, size: D, rng: &mut dyn RngCore) -> NodePermutation<D> {
        let len = size.value();
        let mut indices = OVector::<usize, D>::from_iterator_generic(size, U1, 0..len);
        indices.as_mut_slice().shuffle(rng);

        NodePermutation { permutation: indices }
    }
}

pub struct SwapPerturbation<D> {
    _phantom: PhantomData<D>
}

impl<D> SwapPerturbation<D> {
    pub fn new() -> Self {
        Self { _phantom: PhantomData }
    }
}

impl<D> PerturbationOperator for SwapPerturbation<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
{
    type Chromosome = NodePermutation<D>;

    fn perturb(&self, chromosome: &mut Self::Chromosome, rng: &mut dyn RngCore) {
        let first = rng.random_range(0..chromosome.permutation.len());
        let second = rng.random_range(0..chromosome.permutation.len());
        chromosome.permutation.swap_rows(first, second);
    }
}

pub struct ReverseSubsequencePerturbation<D> {
    _phantom: PhantomData<D>
}

impl<D> ReverseSubsequencePerturbation<D> {
    pub fn new() -> Self {
        Self { _phantom: PhantomData }
    }
}

impl<D> PerturbationOperator for ReverseSubsequencePerturbation<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
{
    type Chromosome = NodePermutation<D>;

    fn perturb(&self, chromosome: &mut Self::Chromosome, rng: &mut dyn RngCore) {
        let first = rng.random_range(0..chromosome.permutation.len());
        let second = rng.random_range(0..chromosome.permutation.len());

        let start = first.min(second);
        let end = first.max(second);

        // Reverse the subsequence between start and end (inclusive)
        let mut left = start;
        let mut right = end;

        while left < right {
            chromosome.permutation.swap_rows(left, right);
            left += 1;
            right -= 1;
        }
    }
}

pub struct EdgeRecombinationCrossover<D> {
    _phantom: PhantomData<D>
}

impl<D> EdgeRecombinationCrossover<D> {
    pub fn new() -> Self {
        Self { _phantom: PhantomData }
    }
}

impl<D> Crossover<2> for EdgeRecombinationCrossover<D>
where
    D: Dim,
    DefaultAllocator: Allocator<D, D>,
    DefaultAllocator: Allocator<D>,
    DefaultAllocator: nalgebra::allocator::Allocator<D, Const<4>>
{
    type Chromosome = NodePermutation<D>;
    type Out = f64;

    fn crossover(
        &self,
        parents: &eoa_lib::replacement::EvaluatedPopulation<Self::Chromosome, Self::Out>,
        pairs: impl Iterator<Item = eoa_lib::pairing::ParentPairing<2>>,
        rng: &mut dyn RngCore
    ) -> eoa_lib::replacement::Population<Self::Chromosome> {
        let mut offsprings = vec![];

        let permutation = &parents.population[0].chromosome.permutation;
        let len = permutation.len();
        let mut adjacency_lists = OMatrix::from_element_generic(
            permutation.shape_generic().0,
            Const::<4>,
            None);
        let mut used_nodes = OVector::from_element_generic(
            permutation.shape_generic().0,
            Const::<1>,
            false
        );

        let mut neighbors_count = OVector::from_element_generic(
            permutation.shape_generic().0,
            Const::<1>,
            2usize
        );

        for pair in pairs {
            let parent1 = &parents.population[pair.x].chromosome;
            let parent2 = &parents.population[pair.y].chromosome;

            used_nodes.apply(|n| *n = false);

            // 1. Populate adjacency lists
            for (&c1, &n, &c2) in parent1.permutation.iter().circular_tuple_windows() {
                adjacency_lists[(n, 0)] = Some(c1);
                adjacency_lists[(n, 1)] = Some(c2);
                neighbors_count[n] = 2;
            }

            for (&c1, &n, &c2) in parent2.permutation.iter().circular_tuple_windows() {
                // Not duplicit?
                if adjacency_lists[(n, 0)].unwrap() != c1 && adjacency_lists[(n, 1)].unwrap() != c1 {
                    neighbors_count[n] += 1;
                    adjacency_lists[(n, 2)] = Some(c1);
                } else { // Duplicit
                    adjacency_lists[(n, 2)] = None;
                }

                // Not duplicit
                if adjacency_lists[(n, 0)].unwrap() != c2 && adjacency_lists[(n, 1)].unwrap() != c2 {
                    neighbors_count[n] += 1;
                    adjacency_lists[(n, 3)] = Some(c2);
                } else { // Duplicit
                    adjacency_lists[(n, 3)] = None;
                }
            }

            let chosen_parent = if rng.random_bool(0.5) {
                &parent1
            } else {
                &parent2
            };

            let mut offspring = OVector::from_element_generic(permutation.shape_generic().0, Const::<1>, 0);

            let mut current_node = chosen_parent.permutation[0];

            for i in 0..len-1 {
                offspring[i] = current_node;
                used_nodes[current_node] = true;

                for neighbor in adjacency_lists.row(current_node) {
                    if let Some(neighbor) = neighbor {
                        neighbors_count[*neighbor] -= 1;
                    }
                }

                let min_neighbors = adjacency_lists.row(current_node)
                    .iter()
                    .flatten()
                    .filter(|&&neighbor| !used_nodes[neighbor])
                    .map(|&neighbor| neighbors_count[neighbor])
                    .min();

                let neighbor = if let Some(min_neighbors) = min_neighbors {
                    adjacency_lists.row(current_node)
                        .iter()
                        .flatten()
                        .copied()
                        .filter(|&neighbor| !used_nodes[neighbor] && neighbors_count[neighbor] == min_neighbors)
                        .choose(rng)
                } else {
                    None
                };

                current_node = if let Some(neighbor) = neighbor {
                    neighbor
                } else {
                    (0..len).filter(|&node| !used_nodes[node])
                    .choose(rng)
                    .unwrap()
                };
            }

            offspring[len - 1] = current_node;

            offsprings.push(NodePermutation { permutation: offspring });
        }

        Population::from_vec(offsprings)
    }
}

#[cfg(test)]
mod tests {
    use std::convert::Infallible;

    use eoa_lib::{crossover::Crossover, fitness::FitnessFunction, initializer::Initializer, pairing::{AdjacentPairing, Pairing}, replacement::Population};
    use nalgebra::{Const, SVector, U2, U6};
    use rand::{rngs::StdRng, RngCore, SeedableRng};

    use crate::tsp::TSPInstance;

    use super::{EdgeRecombinationCrossover, NodePermutation, TSPRandomInitializer};

    struct MockRng;
    impl RngCore for MockRng {
        fn next_u32(&mut self) -> u32 {
            0
        }

        fn next_u64(&mut self) -> u64 {
            0
        }

        fn fill_bytes(&mut self, _: &mut [u8]) {
            panic!()
        }
    }

    struct ZeroFitness<const LEN: usize>;
    impl<const LEN: usize> FitnessFunction for ZeroFitness<LEN> {
        type In = NodePermutation<Const<LEN>>;
        type Out = f64;
        type Err = Infallible;

        fn fit(self: &Self, _: &Self::In) -> Result<Self::Out, Self::Err> {
            Ok(0.0)
        }
    }

    #[test]
    fn test_edge_recombination_properties() {
        let crossover = EdgeRecombinationCrossover::<Const<10>>::new();
        let initializer = TSPRandomInitializer::<Const<10>>::new();
        let adjacency_pairing = AdjacentPairing::new();

        let mut rng = StdRng::seed_from_u64(0);
        for _ in 0..100 {
            let parents = Population::from_vec(initializer.initialize(Const::<10>, 10, &mut rng));
            let parents = parents.evaluate(&ZeroFitness).unwrap();

            let pairs = adjacency_pairing.pair(&parents, 0..10);
            let result = crossover.crossover(&parents, pairs, &mut rng);

            // Test invariants that should always hold:
            for chromosome in result.into_iter() {
                assert!(TSPInstance::verify_solution(&chromosome));
            }
        }
    }

    #[test]
    fn test_edge_recombination_specific_case() {
        let parent1: Vec<usize> = vec![0, 1, 2, 4, 5, 3];
        let parent2: Vec<usize> = vec![2, 0, 1, 3, 4, 5];

        let parent1 = NodePermutation::<U6> { permutation: SVector::<usize, 6>::from_vec(parent1) };
        let parent2 = NodePermutation::<U6> { permutation: SVector::<usize, 6>::from_vec(parent2) };

        let pairing = SVector::<usize, 2>::new(0, 1);
        let pairings = vec![pairing].into_iter();

        let parents = Population::from_vec(vec![parent1, parent2]).evaluate(&ZeroFitness).unwrap();

        let crossover = EdgeRecombinationCrossover::<U6>::new();

        let offsprings = crossover.crossover(&parents, pairings, &mut MockRng);
        let offspring = offsprings.into_iter().next().unwrap();

        eprintln!("{:?}", offspring);

        assert_eq!(vec![0usize, 1, 3, 4, 5, 2], offspring.permutation.into_iter().copied().collect::<Vec<_>>())
    }

}