import: crate: Generate comments with ‘TODO REVIEW:’ prefix.

This distinguishes them from manually added ones.  When committing changes,
these ‘TODO REVIEW’ comments should be addressed and removed first.

If you're working with Rust packaging, please update your local Guix to this
commit to apply the change.

* guix/import/crate.scm (cargo-lock->expressions): Generate comments with
‘TODO REVIEW:’ prefix.
* tests/import/crate.scm ("crate-lockfile-import"): Don't check the exact
comment string.
* doc/guix-cookbook.texi (Common Workflow for Rust Packaging),
* gnu/packages/rust-crates.scm: Adjust accordingly.

Change-Id: I76b914b49be46d04cc61b101b6bc9e31cadb7f07
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #4567

gnu: rust-crates: Add ‘package:’ prefix for replaced crates.

This avoids definitions like
‘(define rust-pipewire-0.8.0.fd3d8f7 rust-pipewire-0.8.0.fd3d8f7)’.

* gnu/packages/rust-crates.scm: Import (gnu packages rust-sources) module with
‘package:’ prefix.
* etc/teams/rust/rust-crates.tmpl,
* doc/guix-cookbook.texi (Cargo Workspaces and Development Snapshots): Adjust
accordingly.

Change-Id: Ie41556d8f30db65e968d8e8238491f1345eeed59
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: lc0: Update dependency on onednn.

* gnu/packages/lc0.scm (lc0)[inputs]: Remove oneapi-dnnl; add onednn.
[native-inputs]: Remove python; add python-minimal-wrapper.

Change-Id: Ie88bf234faf0acfba6b7d378392cb904e9d63536

gnu: ispc: Refresh package.

* gnu/packages/c.scm (ispc)[arguments]: Use G-Expressions; place inputs
after arguments.

Change-Id: I16bf07f559858d6bbbd99950bd591c2ecca40fcf

gnu: ispc: Update to 1.29.1.

* gnu/packages/c.scm (ispc): Update to 1.29.1.
[inputs]: Add onetbb.
[native-inputs]: Remove clang and python; add clang-19 and
python-minimal-wrapper.

Change-Id: I1d6b233b2d714e8cda67f5e95221b959de5863ac

gnu: qemu: Disable failing migration-test on AArch64.

On some AArch64 devices, like RPi5 or honeycombs used by CI, the test fails.

* gnu/packages/patches/qemu-disable-aarch64-migration-test.patch: New file.
* gnu/packages/virtualization.scm (qemu): Patch it.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: Ica2d31bc53e154637036c13517289c6c78010739
Fixes: #2447
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #5683

teams: hpc: Adopt opencl.

* etc/teams.scm (hpc)<#:scope>: Add "gnu/packages/opencl.scm".
* CODEOWNERS: Regenerate file.

Change-Id: I6b0814ca131058e8608c969c777d4d0ca9c6b8ba

gnu: python-pytorch: Patch Python build.

* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Add phases
'patch-build-system to remove "__legacy__".

Change-Id: Ic2243bdb4539cca3a0a0ac955961feeec963c2e5

guix-install.sh: Make /etc/profile.d/zzz-guix.sh usable in set -u shells

* etc/guix-install.sh: Replace $INFOPATH, $MANPATH with ${V:-} variant.

Closes: guix/guix#4534
Change-Id: I82da28d1347b1f37862b903f1721d9bdbb78acd2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #4553

gnu: visionfive2: Update the module commentary.

* gnu/system/images/visionfive2.scm: Update the module commentary.

Change-Id: If3d12bb0e3ccb9eaced4eb1e3afe636c7b89896f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #4855

gnu: linux-libre 6.17-riscv: Enable CONFIG_SCSI_VIRTIO.

* gnu/packages/aux-files/linux-libre/6.17-riscv.conf: Enable
CONFIG_SCSI_VIRTIO.

Change-Id: I60920b484aa585e184f7f6174c334752a591d194
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: install-starfive-visionfive2-uEnv.txt: Set extra options.

* gnu/bootloader/u-boot.scm (install-starfive-visionfive2-uEnv.txt): Set
"boot_targets" and "bootcmd_mmc1".

Change-Id: I0ce157d66e792af605cfdb7cc5dbecf6e5171c5a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: make-u-boot-installer: Use the original file name.

* gnu/bootloader/u-boot.scm (make-u-boot-installer): Use the original file
name without the Guix store file prefix when installing a plain file.

Change-Id: Ica2707878c1dd5f7d3b805499a0a38ca76e315af
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: install-starfive-visionfive2-uEnv.txt: Remove "~%".

* gnu/bootloader/u-boot.scm (install-starfive-visionfive2-uEnv.txt): Remove
an extra "~%" from the file contents.

Change-Id: Ie83ae01702538153017e45da51ce2c3000df7899
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: guile-2.2.4: Fix build by using libxcrypt-without-failure-tokens.

* gnu/packages/guile.scm (guile-2.2.4): Use libxcrypt-without-failure-tokens.

Change-Id: I91d4d7287636f34aa64ce8d47736b14c311b7a62
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #5624

gnu: Add libxcrypt-without-failure-tokens.

* gnu/packages/crypto.scm (libxcrypt-without-failure-tokens): New variable.

Change-Id: I89f551d2e69f68d7c2440593c00b4dbc4c605b89
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: parallel: Build info files.

* gnu/packages/parallel.scm (parallel)[native-inputs]: Add texinfo.
[arguments]: Add ’replace-texi-files #:phase.

Closes guix/guix!5311

Change-Id: If2c750a67d5eb3e422ba541383861e9120b4007e

gnu: parallel: Modernize.

* gnu/packages/parallel.scm (parallel)[arguments]: Use G-Expressions.

Closes guix/guix!5311

Change-Id: I5bd5613eb3fb8332cb14dccc46cda5bafc44195a

teams: hpc: Adopt parallel module.

* etc/teams.scm (hpc)<#:scope>: Add "gnu/packages/parallel.scm".
* CODEOWNERS: Regenerate file.

Closes guix/guix!5310

Change-Id: I10dd26c427d4d369ef80a49e5e57af21a7049a29

doc: Rename package variants index anchor terms.

* doc/guix.texi (Package Transformation Options): Add index term and move
index term from here...
(Defining Package Variants): ...to here and add index term.

Fixes: guix/guix#2191
Change-Id: I8ed71d3db8a6c70368f9ae37d159622a5512db42
Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>