~ruther/guix-local

e4e5a4d8 — Ricardo Wurmus 11 years ago 
gnu: Add eXpress.

* gnu/packages/bioinformatics.scm (express): New variable.
9794180d — Ricardo Wurmus 11 years ago 
gnu: Add bamtools.

* gnu/packages/bioinformatics.scm (bamtools): New variable.
dbf4ed7c — Ricardo Wurmus 11 years ago 
gnu: Add subread.

* gnu/packages/bioinformatics.scm (subread): New variable.
44fd6ef1 — Ludovic Courtès 11 years ago 
ui: Add 'symlink' replacement with better error reporting.

* guix/ui.scm (symlink): New procedure.
3392ce5d — Ludovic Courtès 11 years ago 
system: Make /gnu/store a read-only bind mount by default.

* gnu/system/file-systems.scm (%immutable-store): New variable.
  (%base-file-systems): Add it.
* doc/guix.texi (File Systems): Document it.
b86fee78 — Ludovic Courtès 11 years ago 
file-systems: Use a second 'mount' call for read-only bind mounts.

* gnu/build/file-systems.scm (MS_REMOUNT): New constant.
  (mount-file-system): Add 'flags' local variable.   When FLAGS has
  MS_BIND & MS_RDONLY, call 'mount' with MS_REMOUNT.
* gnu/services/base.scm (file-system-service) <start>: Likewise.
38cf2ba0 — Ludovic Courtès 11 years ago 
gnu: Remove all #:select from (gnu packages ...) modules.

This works around Guile bug <http://bugs.gnu.org/15540>.
Reported by Andreas Enge <andreas@enge.fr>.

* gnu/packages/engineering.scm: Don't #:select from (gnu packages ...).
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/moe.scm: Likewise, and #:select from (guix licenses)
  instead.
f7328634 — Ludovic Courtès 11 years ago 
gexp: Add printers for <gexp-input> and <gexp-output>.

* guix/gexp.scm (write-gexp-input, write-gexp-output): New procedures.
  (<gexp-input>, <gexp-output>): Use them as printers.
c568191a — Ludovic Courtès 11 years ago 
profiles: Create a CA certificate bundle only when it would be non-empty.

* guix/profiles.scm (ca-certificate-bundle): Create
  $output/etc/ssl/certs if and only if CA-FILES is non-empty.
51c64999 — Ricardo Wurmus 11 years ago 
gnu: Add sra-tools.

* gnu/packages/bioinformatics.scm (sra-tools): New variable.
75dd2424 — Ricardo Wurmus 11 years ago 
gnu: Add NCBI VDB.

* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
2651a5e6 — Ricardo Wurmus 11 years ago 
gnu: Add NGS Java bindings.

* gnu/packages/bioinformatics.scm (ngs-java): New variable.
282c5087 — Ricardo Wurmus 11 years ago 
gnu: Add NGS SDK.

* gnu/packages/bioinformatics.scm (ngs-sdk): New variable.
85c37e29 — Ricardo Wurmus 11 years ago 
gnu: Add Biopython.

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): New
  variables.
40b084a3 — Eric Bavier 11 years ago 
gnu: Adjust latest perl modules to new 'modify-phases' syntax.

* gnu/packages/compression.scm (perl-compress-raw-zlib)[arguments]:
  Add missing quotes, as needed since commit f8503e2.
* gnu/packages/perl.scm (perl-ipc-run)[arguments]: Likewise.
* gnu/packages/xml.scm (perl-xml-sax)[arguments]: Likewise.
61c21ad3 — 宋文武 11 years ago 
gnu: Add WebKitGTK+.

* gnu/packages/webkit.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
97b05abe — Eric Bavier 11 years ago 
gnu: Add JSON-Any.

* gnu/packages/perl.scm (perl-json-any): New variable.
47945cf3 — Eric Bavier 11 years ago 
import: cpan: Fix license string for Artistic license.

* guix/import/cpan.scm (string->license): Remove extraneous "_0"
  suffix for Artistics licenses.
ae6904dc — Eric Bavier 11 years ago 
gnu: nix: Propagate perl inputs.

* gnu/packages/package-management.scm (nix)[inputs]: Move
  perl-www-curl, perl-dbi, perl-dbd-sqlite to...
  [propagated-inputs]: ...this new field
8ac84f23 — Eric Bavier 11 years ago 
gnu: Add Sys-Hostname-Long.

* gnu/packages/perl.scm (perl-sys-hostname-long): New variable.
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