gnu: r-genomeinfodb: Update to 1.38.7.

* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.7.
[propagated-inputs]: Remove r-rcurl.

Change-Id: Ifc265a49ed946f3548ff279b930a8346c42025a8

gnu: r-deseq2: Update to 1.42.1.

* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.1.

Change-Id: Ida0b7ad662c44b2b12af487bb6aa8364874ce3da

gnu: r-biostrings: Update to 2.70.3.

* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.3.

Change-Id: I4a921a148d9f54be13967ed0e3092353a683f20f

gnu: r-coregx: Update to 2.6.1.

* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.1.

Change-Id: Icb0eb5a7697811f4272cda3d42d3c428bb59bd23

gnu: r-asics: Update to 2.18.1.

* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.1.

Change-Id: I760771fd8fe57984ae1d0c96b72cb63562a1b43e

doc: build: Update paths to style sheets.

The Guix website style sheets are now organized in themes. This change
makes the documentation builder use the resources provided by a theme
called "initial" (See https://issues.guix.gnu.org/69783).

* doc/build.scm (syntax-highlighted-html): Update path to CSS.
(html-manual-indexes): Likewise.
(stylized-html): Likewise, and update path to language picker image.

Change-Id: Ib2d51fcfdec42ad827add1ead1cfee4c9c4e65b7
Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>

gnu: alacritty: Fix loading of libxkbcommon-x11.so.

* gnu/packages/terminals.scm (alacritty)[arguments]: Handle
libxkbcommon-x11.so in the ‘add-absolute-library-references’ phase.

This fixes this error:

thread 'main' panicked at /tmp/guix-build-alacritty-0.13.1.drv-0/source/guix-vendor/rust-xkbcommon-dl-0.4.1.tar.gz/src/x11.rs:59:28:
Library libxkbcommon-x11.so could not be loaded.
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace

Change-Id: Ifbf19b4962bc3d9eeba6acdf32ca66b0c662f493
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>

gnu: python-pycurl: Disable one failing test.

* gnu/packages/python-web.com (python-pycurl) [arguments]
<#:test-flags>: Disable one more failing test which occurs on CI with
CPU thread count more than 16.

Change-Id: Ie772a7f096357b541cc8baa2349a524f05500e52

Revert "gnu: linux-libre-documentation: Fix compilation."

This bug was fixed upstream in 6.7.6.

This reverts commit b6f82b9ef1a3d51a39995598eab9f793656e9123.

Change-Id: Ia756a62b29ad1f342b0e7430a0cb88cc140974eb

gnu: linux-libre 4.19: Update to 4.19.309.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.309.
(linux-libre-4.19-pristine-source): Update hash.

Change-Id: If579a8179ded35cb4269e733bd96ee6f7c5d5360

gnu: linux-libre 5.4: Update to 5.4.271.

* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.271.
(linux-libre-5.4-pristine-source): Update hash.

Change-Id: Iaf7277f1f4ec3f106b8f0b82aef5a8be953972bd

gnu: linux-libre 5.10: Update to 5.10.212.

* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.212.
(linux-libre-5.10-pristine-source): Update hash.

Change-Id: I620729ec22cd67bbe22dc808ba6b4d74d2c0479d

gnu: linux-libre 5.15: Update to 5.15.151.

* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.151.
(linux-libre-5.15-pristine-source): Update hash.

Change-Id: I83ddffad4f1ce05723faa5d243e8345b21e39edb

gnu: linux-libre 6.1: Update to 6.1.81.

* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.81.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.

Change-Id: Iaec9f01a190d67bcab490c318456241ea8eabf22

gnu: linux-libre 6.6: Update to 6.6.21.

* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.21.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: Ic2f197add55f89196010c32957e10d3683cb8c01

gnu: linux-libre: Update to 6.7.9.

* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.9.
(linux-libre-6.7-pristine-source): Update hash.

Change-Id: I9d3e3907623b17f1a47b78ea00e9b7a5cf428ff6

gnu: python-pycurl: Enable tests.

* gnu/packages/python-web.scm (python-pycurl): Enable most of the tests.
[build-system]: Swap to pyproject-build-system.
[arguments] <#:tests?>: Enable them.
<#:test-arguments>: Disable some failing and hanging tests.
[native-inputs]: Add python-flaky, python-pytest, and
python-pytest-xdist.

Change-Id: Ie222aa1111720f2e39b950b79d9e707401be7e8f

gnu: packages: python-web: Sort use-modules alphabetically.

* gnu/packages/python-web.scm: Sort #:use-module alphabetically to ease
maintenance.

Change-Id: Id01b66ff7eaf610895c1275c2abfd9de2e537d8e

gnu: Add python-zodb.

* gnu/packages/python-web.scm (python-zodb): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-zodbpickle.

* gnu/packages/python-web.scm (python-zodbpickle): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>