gnu: Move crypto packages from haskell to haskell-crypto.
* gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse,
ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5,
ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem,
ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation,
ghc-x509-system): Move variables to ...
* gnu/packages/haskell-crypto.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/haskell-web.scm,
gnu/packages/version-control.scm: Include haskell-crypto module.
gnu: Move web packages from haskell to haskell-web.
* gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http,
ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2,
ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit,
ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types,
ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty,
ghc-aeson-qq, ghc-multipart): Move variables to ...
* gnu/packages/haskell-web.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-web module.
gnu: Move testing packages from haskell to haskell-check.
* gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml,
ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty,
ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun,
ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io,
ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit,
ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit,
hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib,
ghc-hspec-expectations): Move variables to ...
* gnu/packages/haskell-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-check module.
gnu: cd-hit: Update source tarball hash.
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
services: guix: Remove dependency on 'lsof'.
This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134:
'list-runtime-roots' no longer depends on 'lsof'.
* gnu/services/base.scm (<guix-configuration>)[lsof]: Remove.
(guix-shepherd-service): Adjust accordingly.
* doc/guix.texi (Base Services): Adjust accordingly.
* gnu/system.scm (%base-packages): Remove LSOF.
gnu: guix: Update snapshot.
* gnu/packages/package-management.scm (guix): Update to ff23b47.
tests: 'guix-gc.sh' passes even when 'out' or 'drv' are defined as env vars.
This fixes a test failure exhibited by
fb17a89912c2a3738dae716e30481c11e1c6f0ac whereby assignments to 'out' in
guix-gc.sh would go to the 'out' environment variable, when it exists,
which in turn prevents garbage collection of $out.
* tests/guix-gc.sh: Add 'unset' invocations.
gnu: ibus: Update to 1.5.17.
* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
gnu: ibus: Enable wayland support.
* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
gnu: libsoup: Update to 2.60.2.
* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
list-runtime-roots: Ignore PIDs we cannot access.
This allows running as non-root.
Fixes a regression introduced in b8f59cdc20e9d83ce63523ef917e95fcee07f134.
* nix/scripts/list-runtime-roots.in (referenced-files): Handle EACCES in
addition to ENOENT.
download: Use HTTPS for the first ImageMagick mirror.
* guix/download.scm (%mirrors)[imagemagick]: Use HTTPS for <sunsite.icm.edu.pl>.
download: Try FTP servers last.
* guix/download.scm (%mirrors)[savannah, kernel.org, apache, xorg, imagemagick]:
Re-arrange so that FTP is last.
gnu: imagemagick: Update to 6.9.9-23.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
list-runtime-roots: Canonicalize store items.
Looking at 'addAdditionalRoots' in libstore/gc.cc, it looks like it
should always have been this way. In practice it probably doesn't make
much of a difference.
* nix/scripts/list-runtime-roots.in (canonicalize-store-item): New
procedure.
<top level>: Use it.
list-runtime-roots: Do not use 'lsof'.
This makes things a bit faster (0.8s instead of 1.4s on my laptop).
* nix/scripts/list-runtime-roots.in (lsof-roots): Remove.
(proc-fd-roots): Return the empty list when 'scandir' returns #f.
(referenced-files): New procedure.
Use it at the top level.
doc: Better explain GC roots.
Fixes <https://bugs.gnu.org/24194>.
Reported by J. Eppler <j.eppler@openmailbox.org>.
* doc/guix.texi (Invoking guix-daemon): Add index entries for GC roots.
Add xref to "Invoking guix gc".
(Invoking guix gc): Add the string "GC roots"; mention /var/guix/gcroots.
(Additional Build Options): Add index entries. Better explain --root.
(Invoking guix environment): Add xref to "Invoking guix gc".
gnu: linux-libre: Change URL to HTTPS.
* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.
Signed-off-by: Leo Famulari <leo@famulari.name>