gnu: python-brian2tools: Switch to pyproject.

* gnu/packages/machine-learning.scm (python-brian2tools):
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Remove python-setuptools and python-setuptools-scm.
[native-inputs]: Remove python-pytest; add python-setuptools,
python-setuptools-scm.

Change-Id: Idfa91dcf22f79aba09ce2191ac89f0e2772dfbf5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pyxel: Switch to pyproject.

* gnu/packages/game-development.scm (python-pyxel):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
[native-inputs]: Add python-setuptools.

Change-Id: I0eaabe563883bdcd6ed4b0a268e25ba9c55285bb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pyspoa: Switch to pyproject.

* gnu/packages/bioinformatics.scm (python-pyspoa):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:phases>: Migrate phase 'check to <#:test-backend, #:test-flags>.
[native-inputs]: Add python-setuptools.

Change-Id: Ib38a5779d6b73050126c377f6b0c5d5a53ef25aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pytorch: Switch to pyproject.

* gnu/packages/machine-learning.scm (python-pytorch):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests?>: Relocate field.
<#:phases>: Add a fix in phase 'use-system-libraries.

Change-Id: I780c1be6d9f1d3359a35a16686d3dd45b3b940f3
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pypairix: Fix package.

The package was missing binaries, which were not produced because
CFLAGS were effectively ignored.

* gnu/packages/bioinformatics.scm (python-pypairix)[arguments]
<#:phases>: Add phase 'respect-CFLAGS.

Change-Id: Id982af5f5a0c43c6fc20e109a5419913e47882e9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: hg-commitsigs: Switch to pyproject.

* gnu/packages/version-control.scm (hg-commitsigs):
[arguments]<#:imported-modules, #:modules>: Switch to
pyproject-build-system, remove unneeded modules.
<#:phases>: Simplify phase 'patch-paths.
<#:install-plan>: Relocate field, use gexps.

Change-Id: I4c7c264203ad56acd609620284e1fd2595822235
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: mercurial: Switch to pyproject.

* gnu/packages/version-control.scm (mercurial):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: Ibe483ca3f46e8c886e0b6d180f28939763617082
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: flair: Switch to pyproject.

* gnu/packages/bioinformatics.scm (flair):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Remove phases 'build and 'install.

Change-Id: Iaf2e75c1830faae61dcab542a733773b621aa93c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: syncplay: Switch to pyproject.

* gnu/packages/video.scm (syncplay):
[source]: Delete darkdetect vendored dependency.
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
<#:tests?>: Use it instead of deleting 'check phase.
[native-inputs]: Add python-setuptools.

Change-Id: Ie5b59aa0b58106d246bd07a3982261018d256e04
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: gmsh: Switch to pyproject.

* gnu/packages/maths.scm (gmsh):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: Ia3506c1e8e9ebff9c24a7e2b5ba66555187f6068
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: ringdecomposerlib: Switch to pyproject.

* gnu/packages/chemistry.scm (ringdecomposerlib):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: I3ef172d91c5c7c4a9039ce57be39164af9601e6c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-celery: Update to 5.6.2.

* gnu/packages/python-xyz.scm (python-celery): Update to 5.6.2.
[arguments] <test-flags>: Skip one more test.
[phases]{relax-requirements}: Remove phase.
[propagated-inputs]: Remove python-tzdata; add python-tzlocal.
[native-inputs]: Add python-pytest-order.

Change-Id: I2b5978c5759b6290a86de1a31755468deba40282
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-kombu: Update to 5.6.0.

* gnu/packages/python-xyz.scm (python-kombu): Update to 5.6.0.
[phases]{relax-requirements}: Specify which version of tzdata we are
relaxing.
[propagated-inputs]: Remove python-typing-extensions; add
python-packaging and python-tzdata.
[native-inputs]: Remove python-tzdata; add python-pytest-freezer.

Change-Id: I8a9793e5b269480aa180d5de928e85a9ea1511f4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-click-plugins-1: Add a maintenance note.

* gnu/packages/python-xyz.scm (python-click-plugins-1): Add a maintenance
note.

Change-Id: If3dec531b59ace642976c11ae7e8a8d7de33b334
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-celery: Fix build on CI.

The issue with "Too many open files" is known by upstream and has been
reported several times already:

- high concurrency results in OSError,
<https://github.com/celery/celery/issues/4541>, (2018).
- Autoreload doesn't reload if modules imported by the tasks module
change, <https://github.com/celery/celery/issues/1025>, (2012).
- OSError: Too many open files,
<https://github.com/celery/celery/issues/887>, (2012).

* gnu/packages/python-xyz.scm (python-celery): Fix build on ci.
[arguments]<:#test-flags>: Disable tests that fail on the CI.

Change-Id: I47f132a7f4c10cfa28e756699a565cb53c4f2e04
Reviewed-by: Cayetano Santos <csantosb@inventati.org>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pyjanitor: Update to 0.32.5.

* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.32.5.
[arguments] <test-flags>: Rework ignored/skipped tests.
[propagated-inputs]: Remove python-requests.
[native-inputs]: Add python-openpyxl and python-requests.
[synopsys]: pandas->Pandas.

Change-Id: I12f3f1f6ab84d63882325103e8c729d44656c97c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pandas-flavor: Update to 0.8.1.

* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.8.1.
[phases]{fix-pytest-config}: New phase.
[propagated-inputs]: Remove python-lazy-loader and python-packaging.
[native-inputs]: Add python-setuptools and python-setuptools-scm.

Change-Id: I1f1325350f77ed61146f32da5bdc81aad1daec27
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: h-client: Switch to pyproject.

* gnu/packages/hardware.scm (h-client):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
<#:test-backend>: Set it.
<#:phases>: Relocate phase 'glib-or-gtk-wrap.
[native-inputs]: Add python-setuptools.

Change-Id: I525ea229449ed46721d17f458a46f3222804ac4e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: hplip: Switch to pyproject.

* gnu/packages/cups.scm (hplip):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: I0150ce69467c4409ce6dfa45d094304d42c98f01
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: sugar-datastore: Switch to pyproject.

* gnu/packages/sugar.scm (sugar-datastore):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: Iacbdc6a880ceedcc8d325187703f1e1a7e90c9de
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>