gnu: icecat: Fix CVE-2021-43527.
* gnu/packages/patches/icecat-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat-source): Apply it.
gnu: nss: Fix CVE-2021-43527 via graft.
* gnu/packages/patches/nss-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable
(nss)[replacement]: New field.
gnu: openjdk16: Use MAKE-FILE-WRITABLE.
* gnu/packages/java.scm (openjdk16)[arguments]: Do not shell out to "chmod".
gnu: Add openjdk17.
* gnu/packages/java.scm (openjdk17): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
doc: Give more details about generating patches with base commit information.
* doc/contributing.texi (Submitting Patches): Talk more about '--base'.
gnu: python2-decorator: Downgrade to 4.3.0
* gnu/packages/python-xyz.scm (python2-decorator): Keep at 4.3.0.
(python-decorator)[properties]: Add python2-variant.
gnu: ribodiff: Remove trailing #T.
* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Remove trailing #T
from build phase.
gnu: ribodiff: Disable broken test.
* gnu/packages/bioinformatics.scm (ribodiff)[arguments]: Add build phase
'disable-plot-test.
gnu: python2-statsmodels: Downgrade to 0.9.0.
* gnu/packages/statistics.scm (python2-statsmodels): Downgrade to 0.9.0.
gnu: khmer: Fix build with Python 3.8.
* gnu/packages/bioinformatics.scm (khmer)[source]: Remove trailing #T.
[arguments]: Remove trailing #T from build phases; add build phase
'python-3.8-compatibility.
gnu: python-biom-format: Update to 2.1.10.
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.10.
[source]: Simplify snippet.
[arguments]: Add phase 'relax; remove trailing #T from other build phases.
[propagated-inputs]: Add python-anndata; replace python-pandas-0.25 with
python-pandas.
gnu: pardre: Update to 2.2.5.
* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5.
[arguments]: Remove trailing #T and update comment about tests.
gnu: pardre: Use C++ bindings for MPI.
* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with
openmpi-c++.
gnu: Add openmpi-c++.
* gnu/packages/mpi.scm (openmpi-c++): New variable.
gnu: Add libconfini.
* gnu/packages/cpp.scm (libconfini): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
gnu: shotcut: Update to 21.10.31.
* gnu/packages/video.scm (shotcut): Update to 21.10.31.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
gnu: kdenlive: Update to 21.08.3.
* gnu/packages/kde.scm (kdenlive): Update to 21.08.3.
[arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are
currently disabled.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
gnu: mlt: Update to 7.2.0.
* gnu/packages/video.scm (mlt): Update to 7.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
gnu: ccls: Update to 0.20210330.
* gnu/packages/cpp.scm (ccls): Update to 0.20210330.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>