gnu: axel: Update to 2.17.11.

* gnu/packages/networking.scm (axel): Update to 2.17.11.

gnu: emacs-geiser-guile: Update to 0.20.

* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): Update to 0.20.

gnu: emacs-geiser: Update to 0.20.

* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.20.
[propagated-inputs]: Add emacs-transient.

gnu: emacs-xml-rpc: Update to 1.0.5.

* gnu/packages/emacs-xyz.scm (emacs-xml-rpc): Update to 1.0.5.

gnu: opencv: Update to 4.5.4.

* gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch: Delete file.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patches.
* gnu/packages/image-processing.scm (opencv): Update to 4.5.4.
[source]: Remove patch; keep bundled quirc.
[arguments]: Build without ade; update build phase 'disable-broken-tests;
remove build phase 'add-ilmbase-include-path.
[native-inputs]: Update source hashes for opencv-contrib and opencv-extra.
[inputs]: Use new style; add imath and openblas; replace openexr-2 with
openexr.
[description]: Reformat first paragraph.

gnu: opencv: Remove trailing #T from snippet.

* gnu/packages/image-processing.scm (opencv)[source]: Remove #T at the end of
the snippet.

gnu: leveldb: Remove --no-rtti flag.

* gnu/packages/databases.scm (leveldb)[arguments]: Patch CMakeLists.txt in
'allow-RTTI phase.

gnu: ceph: Simplify source snippet.

* gnu/packages/storage.scm (ceph)[source]: Simplify snippet.

gnu: ceph: Update to 16.2.7.

* gnu/packages/storage.scm (ceph): Update to 16.2.7.

gnu: Add bash-with-syslog.

* gnu/packages/bash.scm (bash-with-syslog): New variable.

gnu: sortmerna: Update to 4.3.4.

* gnu/packages/bioinformatics.scm (sortmerna): Update to 4.3.4.
[build-system]: Use cmake-build-system.
[arguments]: Disable tests; add configure flags; add phase
'find-concurrentqueue-headers; update 'install phase.
[inputs]: Add concurrentqueue, gflags, rapidjson, and rocksdb.
[native-inputs]: Add pkg-config.

gnu: rocksdb: Update to 6.26.1.

* gnu/packages/databases.scm (rocksdb): Update to 6.26.1.
[build-system]: Use cmake-build-system.
[arguments]: Disable tests for all architectures; update configure-flags to
new build system; remove build phase customization; add two phases:
'build-generically and 'patch-CMakeLists.txt.

gnu: Add concurrentqueue.

* gnu/packages/cpp.scm (concurrentqueue): New variable.

gnu: Apache httpd: Update to 2.4.52 [fixes CVE-2021-{44224,44790}].

* gnu/packages/web.scm (httpd): Update to 2.4.52.

gnu: python-lsp-server: Update to 1.3.3.

* gnu/packages/python-xyz.scm (python-lsp-server): Update to 1.3.3.
[home-page]: Update to new location.

doc: Remove extra closing paren.

* doc/contributing.texi (Emacs Packages): Remove extra paren in example.

gnu: Add tkrev.

* gnu/packages/version-control.scm (tkrev): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: bpytop: Fix build.

* gnu/packages/admin.scm (bpytop)[arguments]: Delete 'sanity-check phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: ghc-microlens: Update home page.

* gnu/packages/haskell-xyz.scm (ghc-microlens)[home-page]: Use new home page.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

doc: Fix wrong home-shepherd-configuration data type.

* doc/guix.texi (Managing User's Daemons): Rename shepherd-configuration for
home-shepherd-configuration.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>