~ruther/guix-local

9512db59 — Ricardo Wurmus 2 years ago
gnu: r-aneufinderdata: Update to 1.30.0.

* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.30.0.

Change-Id: I94049747ac40bfe1926bfe6a34727c35e1fb6578
8f70c235 — Ricardo Wurmus 2 years ago
gnu: r-adductdata: Update to 1.18.0.

* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.18.0.

Change-Id: I268b9dde5e1913d17e195a77005e3c28b41f6aca
b6fb97a2 — Ricardo Wurmus 2 years ago
gnu: r-pfam-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.18.0.

Change-Id: Iee6ad8fe9188cb6eb5df5f163e5af228a783b682
f16f8105 — Ricardo Wurmus 2 years ago
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.18.0.

Change-Id: Ic11773dbb44ba5c90ea69142c03bbe7292ca03a6
52654218 — Ricardo Wurmus 2 years ago
gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.5.

* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.5.
[propagated-inputs]: Add r-genomeinfodb.

Change-Id: I77c7e216286314619c05272a0baffb68dcd5a3e6
505aac07 — Ricardo Wurmus 2 years ago
gnu: r-org-mm-eg-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.18.0.

Change-Id: Idee9907070a23dd79bf77e2d4a7e8ac17419826a
f13e4076 — Ricardo Wurmus 2 years ago
gnu: r-org-dr-eg-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0.

Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
8445ad15 — Ricardo Wurmus 2 years ago
gnu: r-org-dm-eg-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0.

Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
0adeabcf — Ricardo Wurmus 2 years ago
gnu: r-org-ce-eg-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0.

Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
297fc0d7 — Ricardo Wurmus 2 years ago
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1.

* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1.

Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725
c5a934df — Ricardo Wurmus 2 years ago
gnu: r-go-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0.

Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7
d9de950a — Ricardo Wurmus 2 years ago
gnu: r-genomeinfodbdata: Update to 1.2.11.

* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11.

Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548
2ee9cce5 — Ricardo Wurmus 2 years ago
gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3.

* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3.

Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f
6ee0d63d — Ricardo Wurmus 2 years ago
gnu: r-reactome-db: Update to 1.86.2.

* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2.

Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453
287c5b08 — Ricardo Wurmus 2 years ago
gnu: r-org-sc-sgd-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0.

Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed
8ec5a25e — Ricardo Wurmus 2 years ago
gnu: r-org-bt-eg-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0.

Change-Id: I4385882eeb83326af88141b301f892632f6cf678
d2573f4e — Ricardo Wurmus 2 years ago
gnu: r-org-eck12-eg-db: Update to 3.18.0.

* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0.

Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c
389c6082 — Ricardo Wurmus 2 years ago
import/cran: Set HOME when ExperimentHub is among the inputs.

* guix/import/cran.scm (phases-for-inputs): Add 'set-HOME phase when
ExperimentHub is among inputs.

Change-Id: Ie3a2443934704eed8694a76a651b806209722421
29353820 — Ricardo Wurmus 2 years ago
import/cran: Also update annotation and experiment packages.

* guix/import/cran.scm (latest-bioconductor-release): Determine package type
and pass it to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI.
(%bioconductor-updater): Compose all bioconductor predicates.

Change-Id: Icef3ae05e28ed0f2796d9abf90e51821d2dfcc4c
d264237d — Jean-Pierre De Jesus DIAZ 2 years ago
gnu: make-crust-package: Unite firmware and tools.

* gnu/packages/firmware.scm (make-crust-package): Perform union of
make-crust-firmware and make-crust-tools.
* gnu/packages/firmware.scm (make-crust-firmware): New procedure.

Change-Id: I687bb6d53aae9bd60ed988baf9d17e92f31faa7b
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