gnu: wfmash: Update to 0.10.5.

* gnu/packages/bioinformatics.scm (wfmash): Update to 0.10.5.
[source]: Update to changes in source code.
[arguments]: Add configure-flag to enable more features.
[native-inputs]: Add pkg-config.

gnu: Add python-tibanna.

* gnu/packages/web.scm (python-tibanna): New variable.

gnu: Add python-lambda-4dn.

* gnu/packages/web.scm (python-lambda-4dn): New variable.

gnu: Add python-benchmark-4dn.

* gnu/packages/python-xyz.scm (python-benchmark-4dn): New variable.

gnu: xterm: Update to 384.

* gnu/packages/xorg.scm (xterm): Update to 384.

gnu: keepassxc: Update to 2.7.6.

* gnu/packages/password-utils.scm (keepassxc): Update to 2.7.6.

gnu: git-annex: Update to 10.20230828.

* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230828.

gnu: wl-clipboard: Update to 2.2.1.

* gnu/packages/xdisorg.scm (wl-clipboard): Update to 2.2.1.

self: Compile guix-packages-base in chunks of 10 files.

This fixes or greatly increases the chances for `guix pull' to succeed on the
Hurd, see <https://issues.guix.gnu.org/65456>.

* guix/self.scm (compiled-modules)[process-directory]: Move hardcoded size to
keyword parameter #:size.  Set it to 10 when compiling "guix-packages-base".

maint: Add gdk-pixbuf to native Hurd manifest.

Gdk-pixbuf is a dependency for `guix system reconfigure' and currently also
needs an unreleased glibc patch in order to build.

* etc/hurd-manifest.scm: Add gdk-pixbuf to manifest.

gnu: Add asl.

* gnu/packages/assembly.scm (asl): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add netperf.

* gnu/packages/networking.scm (netperf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add alure.

* gnu/packages/audio.scm (alure): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

gnu: tensorflow-lite: Update to 2.13.0.

* gnu/packages/machine-learning.scm: (tensorflow-lite):
Update to 2.13.0
[inputs]: Add gemmlowp
[native-inputs]: Remove gemmlowp-src
* gnu/packages/patches/tensorflow-lite-unbundle.patch: New file
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add commit-patch.

* gnu/packages/version-control.scm (commit-patch): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

services: hurd-vm: Use ‘qemu-system-x86_64’.

Fixes <https://issues.guix.gnu.org/66053>.

* gnu/services/virtualization.scm (hurd-vm-shepherd-service)[vm-command]:
Use ‘qemu-system-x86_64’.

doc: Fix typo.

* doc/guix.texi (Specifying Channel Authorizations): Remove extra
hyphen.

maint: Support `guix shell' in Guix's git archive with manifest.scm.

* manifest.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
* doc/contributing.texi (Building from Git): Mention using it.

gnu: tor: Update to 0.4.8.6.

* gnu/packages/tor.scm (tor): Update to 0.4.8.6.
[source]: Remove patch.
* gnu/packages/patches/tor-remove-defensive-assert.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

gnu: julia-deepdiffs: Skip tests.

* gnu/packages/julia-xyz.scm (julia-deepdiffs)[arguments]: Skip the test
suite.