gnu: r-castor: Update to 1.8.0.
* gnu/packages/cran.scm (r-castor): Update to 1.8.0.
[propagated-inputs]: Add r-jsonlite.
Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
gnu: r-rcurl: Update to 1.98-1.14.
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14.
[native-inputs]: Move libxml2 from here...
[inputs]: ...to here.
Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
gnu: r-rstan: Update to 2.32.5.
* gnu/packages/cran.scm (r-rstan): Update to 2.32.5.
[properties]: Tell updater to leave tzdata-for-tests.
Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
gnu: r-topicmodels: Update to 0.2-16.
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16.
[properties]: Tell updater not to remove GSL from inputs.
Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
gnu: r-rpostgresql: Update to 0.7-6.
* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6.
[properties]: Tell updater not to remove postgresql input.
Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
gnu: r-readr: Update to 2.1.5.
* gnu/packages/statistics.scm (r-readr): Update to 2.1.5.
Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
gnu: python-afdko: Disable failing test.
* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable
test_alt_missing_glyph.
Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
gnu: openjdk10: Simplify.
* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build
phase.
Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’.
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0.
* gnu/packages/java.scm (openjdk10)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
gnu: Fix patch location.
This is a follow-up to commit db7488a7fbd829d25b0b5c5e53b1c680b67832b1.
* gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix.
Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb
gnu: openjdk9: Simplify.
* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN.
[arguments]: Delete trailing #T from build phases.
Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.
Fixes <https://issues.guix.gnu.org/68333>, as well.
This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0.
* gnu/packages/java.scm (openjdk9)[source]: Add patch.
* gnu/packages/patches/openjdk-currency-time-bomb.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
gnu: python-distributed: Disable breaking test.
This test times out since the merge of the mesa-updates branch.
* gnu/packages/python-science.scm (python-distributed)[arguments]: Disable
test_tell_workers_when_peers_have_left.
Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
gnu: Add r-jaspar2020.
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.
Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
gnu: Add r-dsb.
* gnu/packages/bioconductor.scm (r-dsb): New variable.
Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
gnu: r-signac: Update to 1.12.0-1.8ecdde2.
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2.
Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
gnu: Add r-escape.
* gnu/packages/bioconductor.scm (r-escape): New variable.
Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
gnu: Add python-telomerecat.
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable.
Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
gnu: Add python-parabam.
* gnu/packages/bioinformatics.scm (python-parabam): New variable.
Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b