gnu: python-gseapy: Add missing input.

* gnu/packages/bioinformatics.scm (python-gseapy)[native-inputs]: Add
python-wheel.

Change-Id: I0ce3d3aeb5aa3fb1ab3f2aa524b066738cf9046a

gnu: python-cattrs: Disable failing test.

* gnu/packages/python-xyz.scm (python-cattrs)[arguments]: Disable one more
test.

Change-Id: I8296abaa2faa745404354cb26f0d08024e7960c8

gnu: python-mudata: Update to 0.3.1.

* gnu/packages/bioinformatics.scm (python-mudata): Update to 0.3.1.
[arguments]: Add phase 'pretend-version.
[native-inputs]: Remove python-flit-core; add python-hatch-vcs and
python-hatchling.

Change-Id: I87b8dc6ec557e0ca69930d82db7d6e64727228e9

gnu: python-locust: Disable some more tests.

* gnu/packages/benchmark.scm (python-locust)[arguments]: Update list of
disabled tests.

Change-Id: I3d6d070a1cc771c006530454b0bb9506287bbe6b

gnu: python-locust: Update to 2.32.5.

* gnu/packages/benchmark.scm (python-locust): Update to 2.32.5.
[source]: Get from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Update list of disabled tests; remove custom 'check phase; add
phase 'fix-version.
[propagated-inputs]: Remove python-flask-basicauth and python-roundrobin; add
python-flask-login, python-setuptools, and python-tomli.
[native-inputs]: Add nss-certs-for-test, python-poetry-core,
and python-poetry-dynamic-versioning; remove python-mock and
python-setuptools-scm.

Change-Id: I5e7203d48eda9279531c9d3060d81d91974dee6e

gnu: python-flask-assets: Update to 2.1.0-1.62efd23.

* gnu/packages/python-web.scm (python-flask-assets): Update to
2.1.0-1.62efd23.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add nss-certs-for-test, python-pytest, python-setuptools, and
python-wheel.

Change-Id: I8c3dedb39d4cc1e51d9c3ef9fe9298586f871736

gnu: python-webassets: Fix build.

* gnu/packages/python-web.scm (python-webassets)[arguments]: Delete broken
tests; run tests with nosetests.
[propagated-inputs]: Add python-pyyaml.
[native-inputs]: Remove python-pytest.

Change-Id: Iee1a38b02770259d11e4c7f6eff5d25c6be52ff9

gnu: Remove python-flask-basicauth.

This project is abandoned and has test failures that indicate that it doesn't
actually work properly anymore.

* gnu/packages/python-web.scm (python-flask-basicauth): Remove variable.

Change-Id: I828bd5409d71d45c5549e74deba3edecbfac4572

gnu: python-flask-login: Update to 0.6.3.

* gnu/packages/python-web.scm (python-flask-login): Update to 0.6.3.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ie1dc0ffccc11172e21d0013d84c064b8c2793e5f

gnu: python-flask-htpasswd: Update to 0.5.0.

* gnu/packages/python-web.scm (python-flask-htpasswd): Update to 0.5.0.
[build-system]: Use pyproject-build-system.
[arguments]: Disable tests.

Change-Id: I24ec759fcfbfef3b64f5ca730ed43bf48690288b

gnu: python-scanpy: Update to 1.10.4.

* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.10.4.
[arguments]: Update list of disabled tests; rename phase 'discover-anndata to
'add-anndata-source.
[native-inputs]: Add python-pytest-mock.

Change-Id: I409678c67d15f3d3e4147be68c7a987c0e095d23

gnu: python-legacy-api-wrap: Update to 1.4.1.

* gnu/packages/python-xyz.scm (python-legacy-api-wrap): Update to 1.4.1.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-coverage, python-hatch-vcs, python-hatchling, and
python-pytest.
[propagated-inputs]: Remove python-get-version, python-pytest,
python-pytest-black, python-pytest-cov, and python-setuptools.

Change-Id: I56ccdc6c9fd8b5e6bcbfcf9255f02949e8f1e705

gnu: python-omnipath: Update to 1.0.8-0.3d16134.

* gnu/packages/python-web.scm (python-omnipath): Update to 1.0.8-0.3d16134.
[source]: Fetch from git repository.
[arguments]: Remove phase 'relax; update list of disabled tests; add phase
'pretend-version.
[native-inputs]: Add nss-certs-for-test.

Change-Id: I9e980702ac8e5662971a9c4bb88a5789758b48ed

gnu: python-pypika-tortoise: Add missing input.

* gnu/packages/databases.scm (python-pypika-tortoise)[native-inputs]: Add
python-setuptools.

Change-Id: Ibe96738292a0948cae2add596fe76ee349c9dfeb

gnu: python-asgi-lifespan: Update to 2.1.0.

* gnu/packages/python-web.scm (python-asgi-lifespan): Update to 2.1.0.
[arguments]: Update list of disabled tests; add phase 'compatibility.
[native-inputs]: Add python-httpx.

Change-Id: Ib4c01ec059920481eefbbe908ba2fdaa9cf3484d

gnu: python-fastapi-pagination-minimal: Update to 0.12.34.

* gnu/packages/python-web.scm (python-fastapi-pagination-minimal): Update to
0.12.34.
[propagated-inputs]: Replace python-pydantic with python-pydantic-2.
[native-inputs]: Replace poetry with python-poetry-core.
(python-fastapi-pagination)[arguments]: Run unit tests; add phase
'patch-tests.
[propagated-inputs]: Replace python-pydantic with python-pydantic-2.
[native-inputs]: Add python-aiosqlite, python-asgi-lifespan, python-asyncpg,
python-faker, python-httpx, python-poetry-core, python-pytest,
python-pytest-asyncio, python-sqlalchemy, and python-typing-extensions.

Change-Id: Icab22aa811c70762296ef47723052702b33c6762

gnu: python-anndata: Update to 0.11.1.

* gnu/packages/python-xyz.scm (python-anndata): Update to 0.11.1.
[arguments]: Update list of disabled tests; do not patch conftest.
[native-inputs]: Add python-pytest-mock.

Change-Id: I6f087bb19a71006fd9f9c2c92150fa4d038fa2a6

guix: toml: Fix evaluation of empty inline tables.

* guix/build/toml.scm (eval-toml-file): Add pattern for empty inline table.
* tests/toml.scm ("parse-toml: Empty inline table"): New testcase.

Change-Id: I69663af2a861716acfb801fad4474e029e102a1b

gnu: python-wrapt: Update to 1.17.0.

* gnu/packages/python-xyz.scm (python-wrapt): Update to 1.17.0.
[arguments]: Enable tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: Ib2e973ec7b09454588bbbbdd5d8446afc53e835b

gnu: python-pytorch-geometric: Disable one test.

* gnu/packages/machine-learning.scm (python-pytorch-geometric)[arguments]:
Disable one more test.

Change-Id: Id69243e70c39b9307745b08156ed956f23d8daa4