gnu: liblantern: Update to 0.16.3.

* gnu/packages/machine-learning.scm (liblantern): Update to 0.16.3.

Change-Id: Idbf7bcd135ff63eb538f08e79cdfbf1c4b5dd3fc

gnu: python-pytorch-for-r-torch: Update to 2.7.1.

* gnu/packages/patches/python-pytorch-for-r-torch-fix-codegen.patch,
  gnu/packages/patches/python-pytorch-for-r-torch-system-libraries.patch: Update.
* gnu/packages/patches/python-pytorch-for-r-torch-without-kineto.patch: New file.
* gnu/local.mk (dist_patch_DATA): Record it.
* gnu/packages/machine-learning.scm
(python-pytorch-for-r-torch): Update to 2.7.1.
[source]: Use new patch.
[arguments]: Remove phase 'fix-aten-vec; copy and adjust 'use-system-libraries
phase from python-pytorch.
[inputs]: Inherit all from python-pytorch; replace gloo with gloo-for-r-torch.
[native-inputs]: Inherit all from python-pytorch.
[propagated-inputs]: Inherit all from python-pytorch.

Change-Id: Ib2cf511fc34f609bbc7e92971720b00c4523419f

gnu: Add gloo-for-r-torch.

* gnu/packages/machine-learning.scm (gloo-for-r-torch): New variable.

Change-Id: Ibaf55d20d42acf6379464f7f7484c9ce67197d40

gnu: Add emacs-calibre.

* gnu/packages/emacs-xyz.scm (emacs-calibre): New variable.

Change-Id: I5e6666230eceed69c33ecbf1ca3f68696fef8cda
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-org-chef: Update to 0.1.3-1.9f74932.

* gnu/packages/emacs-xyz.scm (emacs-org-chef): Update to 0.1.3-1.9f74932.
[arguments]<#:emacs>: Set to emacs-no-x.
<#:phases>: Add patch-tests-to-include-full-file-path.
<#:test-command>: Set.
[propagated-inputs]: Remove emacs-org.
[native-inputs]: Add emacs-ert-runner.

Change-Id: I78377e7e04d2d74aa6bfae4063f1b9dc536f7d78
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: Add iio-sensor-proxy-service-type.

* gnu/services/desktop.scm (iio-sensor-proxy-configuration)
(iio-sensor-proxy-shepherd-service, iio-sensor-proxy-service-type): New
variables.
* doc/guix.texi (Desktop Services): Document iio-sensor-proxy-service-type.

Change-Id: I0c3d7164efcc499e4b785fd1f994c68a971ebdbd
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: Add iio-sensor-proxy.

* gnu/packages/freedesktop.scm (iio-sensor-proxy): New variable.

Change-Id: I942ed65121d93f94d31191c07a21442f246441a5
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-extend-smime: Update translation note.

This is a follow-up to 22a369e03989e875e2c47afffc41ee77db4c7cca.

* gnu/packages/emacs-xyz.scm (emacs-extend-smime): Replace last occurence
of emacs-default-encrypt with emacs-defaultencrypt.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-gt: Update to 3.2.1.

* gnu/packages/emacs-xyz.scm (emacs-gt): Update to 3.2.1.
[propagated-inputs]: Add emacs-pdd.

Change-Id: I534ddf2f35c2b901bc7830efbd2c1ddcf11eaa8f
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-go-translate: Rename to emacs-gt.

* gnu/packages/emacs-xyz.scm (emacs-go-translate): Deprecate and rename to…
(emacs-gt): … this.
[name, source, home-page]: Update accordingly.

Change-Id: I99bff4f387e54974598f1ab9a26acb3d2a05186b
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: Add emacs-pdd.

* gnu/packages/emacs-xyz.scm (emacs-pdd): New variable.

Change-Id: I605eb3a33746942e6defa92ff7c258faf9964581
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-bqn-mode: Update to 2025-07-06.

* gnu/packages/emacs-xyz.scm (emacs-bqn-mode): Update to 2025-07-06.

Change-Id: I6b2eae955fcb693564d82629a074b18f7bd48232
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-info-plus: Update to 0-5.a2322ad.

* gnu/packages/emacs-xyz.scm (emacs-info-plus): Update to 0-5.a2322ad.
[arguments]: Disable #:tests?.

Change-Id: I63ef215d9b3d66ace0393dbd9048422cedfd5260
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-bitbake-modes: Update to 0.8.0.

* gnu/packages/emacs-xyz.scm (emacs-bitbake-modes): Update to 0.8.0.

Change-Id: I8fe6e9ee376d2751bfa1412a04a510b9556ebc33
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: emacs-osm: Use new makeinfo phase.

* gnu/packages/emacs-xyz.scm (emacs-osm)[#:phases]<makeinfo>: Use
emacs-makeinfo.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

gnu: uriparser: Update to 0.9.9.

* gnu/packages/web.scm (uriparser): Update to 0.9.9.

Change-Id: Ieb31a68806db14ffa9d42ea7cd0c897d08dab099
Signed-off-by: jgart <jgart@dismail.de>

gnu: r-mzr: Skip two tests.

* gnu/packages/bioconductor.scm (r-mzr)[arguments]: Add phase 'skip-bad-tests.

Change-Id: I4395329993eeb76de9c820dcd5077f24acf53709
Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>

gnu: Remove python-wget.

Project's source has gone
<https://bitbucket.org/techtonik/python-wget/>, PyPI shows that the
package was updated in 2015 <https://pypi.org/project/wget/#files>.

* gnu/packages/python-web.scm (python-wget): Delete variable.

Fixes: guix/guix#3321
Change-Id: I4d923baa67ebcfa3cc87620a98a0be30a9c429f7

gnu: Remove python-rawkit.

Fails to build, no users in Guix. The project never pass through alpha
stage.

Notes from upstream:

  rawkit is still alpha quality software. Until it hits 1.0, it may
  undergo substantial changes, including breaking API changes.

  This repository was archived by the owner on Oct 4, 2020. It is now
  read-only.

* gnu/packages/python-xyz.scm (python-rawkit): Delete variable.

Fixes: guix/guix#3265
Change-Id: I57950ba736e0b5de1e7a1bdf8cac65ec570cdb00

gnu: Remove python-d2to1.

Fails to build, no longer required.

Note from upstream:

  This repository was archived by the owner on Jun 10, 2020. It is now
  read-only.

* gnu/packages/python-xyz.scm (python-d2to1): Delete variable.

Fixes: guix/guix#3251
Change-Id: I3c37e8f289026e1e8e5147a666f717c8310b5b9e