gnu: python-autograd-gamma: Fix build.

* gnu/packages/machine-learning.scm (python-autograd-gamma): Fix build.
[source]: Switch to git-fetch to have tests.
[native-inputs]: Remove python-wheel; add python-pytest.

Change-Id: Ibb034a65f212917620bb1080f20e6ddc2347c65e
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: python-lifelines: Compute parallel tests.

* gnu/packages/statistics.scm (python-lifelines)[native-inputs]: Add
python-pytest-xdist.
[arguments]: Add --numprocesses flag to #:test-flags, and remove very
slow tests.

Change-Id: Ib2ecc8bec37d9a7f95f992d8af160283b5abe881

news: Announce the end of support for linux-libre 5.4.

* etc/news.scm: Add entry.

Change-Id: I9f8122bb46c5e7d2c369d86d4e8f4888c5b5bcd9

gnu: linux-libre 5.4: Update to 5.4.302.

* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.302.
(linux-libre-5.4-pristine-source): Update hash.

Change-Id: I49194e64f57fb4747ca00a36413a7e7acf41c8c3

gnu: linux-libre 5.10: Update to 5.10.247.

* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.247.
(linux-libre-5.10-pristine-source): Update hash.

Change-Id: If0e5b3f44ba08dd25485538372090eb7febe77df

gnu: linux-libre 5.15: Update to 5.15.197.

* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.197.
(linux-libre-5.15-pristine-source, deblob-scripts-5.15): Update hashes.

Change-Id: Ie541e9481554076eca04f6e9f06fa896048b0fc0

gnu: linux-libre 6.1: Update to 6.1.159.

* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.159.
(linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes.

Change-Id: I022354f52ba32917568dd1ffcf0f4e7e16b61693

gnu: linux-libre 6.6: Update to 6.6.119.

* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.119.
(linux-libre-6.6-pristine-source, deblob-scripts-6.6): Update hashes.

Change-Id: I6c0b0192bec6193fc9e01d776b3ea24517cab709

gnu: linux-libre 6.12: Update to 6.12.61.

* gnu/packages/linux.scm (linux-libre-6.12-version): Update to 6.12.61.
(linux-libre-6.12-pristine-source, deblob-scripts-6.12): Update hashes.

Change-Id: Ic67d16b331c826e96558dd836ae27d3b2fbe0510

gnu: linux-libre: Update to 6.17.11.

* gnu/packages/linux.scm (linux-libre-6.17-version): Update to 6.17.11.
(linux-libre-6.17-pristine-source): Update hash.

Change-Id: I8cc0758200f838bb7ee32660197762d2b9349e23

gnu: icecat: Update to 140.6.0-gnu1 [security fixes].

Includes fixes for CVE-2025-14321, CVE-2025-14322, CVE-2025-14323,
CVE-2025-14324, CVE-2025-14325, CVE-2025-14328, CVE-2025-14329,
CVE-2025-14330, CVE-2025-14331, and CVE-2025-14333.

* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update 'gnuzilla-commit' and hashes.

gnu: tinyxml2: Build position independent.

* gnu/packages/xml.scm (tinyxml2)[arguments]{#:configure-flags}:
Add CMAKE_POSITION_INDEPENDENT_CODE.

Change-Id: I0e41895edc617225ed998d15d050e2306bf7bef5
Signed-off-by: Greg Hogan <code@greghogan.com>

gnu: python-jose: Update to 3.5.0 [security fixes].

This update includes fix for CVE-2024-33663 and CVE-2024-33664.

* gnu/packages/python-web.scm (python-jose): Update to 3.5.0.
[arguments]<#:test-flags>: Re-enable all tests.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-pytest-cov, python-pytest-runner, python-wheel.

Change-Id: I22867a51d333467ffb5e64512a3257f92fc540ee
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: Add python-quantlaw.

* gnu/packages/python-xyz.scm (python-quantlaw): New variable.

Change-Id: I22d57cb02ae805559e26eb345ff140ae420da7ad
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: copyq: Update to 13.0.0.

* gnu/packages/xdisorg.scm (copyq): Update to 13.0.0.
[inputs]: Add kguiaddons, libxtst.

Change-Id: Iea1d53b3e1b09225b91a124192d6727e159835f5
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4674

gnu: bcachefs-linux-module: Update to 1.33.0.

* gnu/packages/file-systems.scm (bcachefs-linux-module): Update to 1.33.0.

Change-Id: Idf01cf4c4bba7e30314c0fb9d9da698a3d2e767d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4693

gnu: python-ldap: Update to 3.4.5 and fix CVE-2025-61911, CVE-2025-61912.

* gnu/packages/openldap.scm (python-ldap): Update to 3.4.5.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Use gexps.
[native-inputs]: Add python-pytest and python-setuptools.

Change-Id: Ib4ec662293d44c4be29fd67adbd592902f7c9e12
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4699

gnu: rlwrap: Update to 0.48.

* gnu/packages/readline.scm (rlwrap): Update to 0.48.
[inputs]: Add libptytty.
* gnu/packages/patches/rlwrap-no-rbgen.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: Id7138bd4b4485bd4438b9140b2896b4093630c42
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4703

gnu: ucx: Update to 1.19.0.

* gnu/packages/fabric-management.scm (ucx): Update to 1.19.0.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Update.

Change-Id: I40dafb5173048804cb2368d0c45e71d1ed014482
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #4675

gnu: prrte: Update to 4.0.0.

* gnu/packages/parallel.scm (prrte): Update to 4.0.0.

Change-Id: I5a7679680a8313464115b1c4aaac89305c2fe1f7
Signed-off-by: Ludovic Courtès <ludo@gnu.org>