gnu: Remove clustal-omega.
Does not build due to failing input argtable@2. No release since 2018.
* gnu/packages/bioinformatics.scm (clustal-omega): Delete variable.
Change-Id: I28d6ce8e44419a4e07dec8a44b23be13af3ca82e
gnu: borgmatic: Update to 2.0.7.
* gnu/packages/backup.scm (borgmatic): Update to 2.0.7.
[inputs]: Remove python-colorama.
Change-Id: I236753e33f21bc8f04e3dad5e4248ba2c4c04398
Signed-off-by: Andreas Enge <andreas@enge.fr>
gnu: diffutils: Skip some tests on all powerpc architectures.
This is a follow-up to e3fbaeee1386fd447f40ffdf53d964d1f8541d49.
* gnu/packages/base.scm (diffutils)[arguments]: When building for any
powerpc architecture add make-flags to mark 2 tests as failed.
Change-Id: Iceea5bbb045b10f704da4783abd8bf244941e793
gnu: icecat: Update to 128.14.0-gnu1 [security fixes].
Includes fixes for MFSA-RESERVE-2025-2 (Memory safety bugs),
MFSA-RESERVE-2025-1977130 (Uninitialized memory in the JavaScript
Engine component), MFSA-RESERVE-2025-1979527 (Sandbox escape due to
invalid pointer in the Audio/Video: GMP component), and
MFSA-RESERVE-2025-1979782 (Same-origin policy bypass in the Graphics:
Canvas2D component).
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update 'gnuzilla-commit' and hashes.
gnu: onnx-optimizer: Reduce closure size.
* gnu/packages/machine-learning.scm (onnx-optimizer) [native-inputs]:
Remove python-pytest-runner, python-coverage, python-setuptools and
python-wheel; add python-setuptools-next.
Change-Id: I713ff521ff3f329733810cb4d80a16684fddc236
gnu: onnx-optimizer: Switch to pyproject.
* gnu/packages/machine-learning.scm (onnx-optimizer): Switch to
pyproject.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools, python-wheel.
Change-Id: Idca467e74209bfe058cf9070412769916a11e68c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: asymptote: Update to 3.05.
* gnu/packages/plotutils.scm (asymptote): Update to 3.05.
[native-inputs]: Add texlive-dvisvgm.
Change-Id: I81bcef820221ed04f2ef94a00175f98ca8a43cb7
Signed-off-by: jgart <jgart@dismail.de>
gnu: Remove bitcoin-unlimited.
* gnu/packages/finance.scm (bitcoin-unlimited): Delete variable.
Fixes: guix/guix#1383
Change-Id: Ic72b4df0ee227b11d7252a5e9534b2ff81212169
gnu: lighttpd: Update to 1.4.81.
* gnu/packages/web.scm (lighttpd): Update to 1.4.81.
Change-Id: Ie308f7d4ef27a2aa320a26b7a7c12f7b4fb4130f
Signed-off-by: Andreas Enge <andreas@enge.fr>
gnu: m2-planet: Update to 1.12.0.
* gnu/packages/mes.scm (m2-planet): Update to 1.12.0.
Change-Id: I79c67e42bb1e055c6d6804eb18115a03f94f056f
gnu: mescc-tools: Update to 1.7.0.
* gnu/packages/mes.scm (mescc-tools): Update to 1.7.0.
Change-Id: I79c67e42bb1e055c6d6804eb18115a03f94f056f
gnu: mes: Use nyacc-2.02.2.
* gnu/packages/mes.scm (mes)[propagated-inputs]: Use nyacc (2.02.2).
Change-Id: I79c67e42bb1e055c6d6804eb18115a03f94f056f
gnu: nyacc: Update to 2.02.2.
We don't want to touch the packages leading up to nyacc-1.00.2 which is used
in commencement.
* gnu/packages/mes.scm (nyacc): Rename to...
(nyacc-1.08.1): ...this.
(nyacc-1.00.2): Update accordingly.
(nyacc): New variable.
Change-Id: I0d8ac098ae6871e6ebcff2090537e26e759c4d9b
gnu: mes: Update to 0.27.1; fixes build with gcc-14.
* gnu/packages/mes.scm (mes): Update to 0.27.1.
Change-Id: Ic77caa0e8ca9cd6b8f97a711c7cff147a68d26c4
gnu: komikku: Fix typo in patch.
This is a follow-up to d3f91786b9fbba9b85ee2ba4aa0efe747ed3d50e, which
introduced a patch to restore backwards compatibility with Python 3.11.
* gnu/packages/patches/komikku-python-3.11-compat.patch: Add missing '{' in
replacement.
gnu: trealla: Update to 2.82.14.
* gnu/packages/prolog.scm (trealla): Update to 2.82.14.
Change-Id: I2bb8d5f7580935a3f3b960b7e5631456177307bc
gnu: nss-rapid: Fix source build.
This is a follow-up to 4918534be1ffc1896a59e2fb69a9eaaa3140a0b8.
* gnu/packages/nss.scm (nss-rapid) [source] <patches>: Correct argument order
for ‘string-suffix?’.
Change-Id: I2c0a79893846faf68d8348e9eb70fd981a3547e6
gnu: ruby-markaby: Update to 0.9.4.
* gnu/packages/ruby-xyz.scm (ruby-markaby): Update to 0.9.4.
Change-Id: If4998a8548bbd8b57b6a178deee799f2a690c154
Signed-off-by: Andreas Enge <andreas@enge.fr>
gnu: python-xmlsec: Fix build with newer xmlsec.
* gnu/packages/python-xyz.scm (python-xmlsec)[arguments]<#:phases>
{pre-check}: Adapt file name.
Change-Id: Ia2af7561ace7828e959969cdf7586175f6e711ee
gnu: xmlsec: Update to 1.3.7.
* gnu/packages/xml.scm (xmlsec): Update to 1.3.7.
Fixes: guix/guix#2060
Change-Id: I16e25e6037734718a20041ec05ee195faa52de0d
Signed-off-by: Andreas Enge <andreas@enge.fr>