gnu: r-wgcna: Update to 1.72-5.

* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.72-5.

Change-Id: Ib9d3b0e6ba191839e4b22cb0b8f63e6b0e9d2baa

gnu: r-spacetime: Update to 1.3-1.

* gnu/packages/cran.scm (r-spacetime): Update to 1.3-1.

Change-Id: I1fe54f97452c0dd738c6cfced56c406498de73c4

gnu: r-openmx: Update to 2.21.11.

* gnu/packages/cran.scm (r-openmx): Update to 2.21.11.

Change-Id: I1349e0965508f42d183d2e705c356fdd3ac9faf0

gnu: r-spacyr: Update to 1.3.0.

* gnu/packages/cran.scm (r-spacyr): Update to 1.3.0.
[native-inputs]: Add r-r-rsp.

Change-Id: I999db8ad92b2d0799ffa4350847980db30c75409

gnu: r-scales: Update to 1.3.0.

* gnu/packages/cran.scm (r-scales): Update to 1.3.0.
[propagated-inputs]: Add r-cli and r-glue.

Change-Id: I37c4a09d6910f9d8885d253547808d3dc2761748

gnu: r-pbdmpi: Update to 0.5-1.

* gnu/packages/cran.scm (r-pbdmpi): Update to 0.5-1.

Change-Id: Iede248c40a0a57bc5a23015745f426cd4485b38c

gnu: r-rjava: Update to 1.0-10.

* gnu/packages/cran.scm (r-rjava): Update to 1.0-10.
[source]: Delete bundled minified JavaScript.
[arguments]: Use minify-build-system in new phase
'replace-bundled-minified-JavaScript.
[native-inputs]: Add esbuild.

Change-Id: I6ca7724ea61f53995067cca8d6835fe061621567

gnu: Add alsa-scarlett-gui.

* gnu/packages/music.scm (alsa-scarlett-gui): New variable.

Change-Id: Ia92a0be7e0f08cf42bc263f2c321b4617fa6935b

gnu: tascam-gtk: Update to 0.4-0.69fb86f.

* gnu/packages/music.scm (tascam-gtk): Update to 0.4-0.69fb86f.
[inputs]: Replace libxml++-2 with libxml++-3.

Change-Id: Iae8ff22ee7ee5888ff4d24209f2f09fbecf52889

gnu: Add libxml++-3.

* gnu/packages/gnome.scm (libxml++-3): New variable.

Change-Id: I2250766126f433b3f5dcc50cd7eaadec3acadad3

gnu: dezyne: Update to 2.18.0.

* gnu/packages/dezyne.scm (dezyne): Update to 2.18.0.
[inputs]: Add boost.
[arguments]: Change assoc-ref memes to use gexps.

Change-Id: I1212de52db6c2b07122e756c68597b1f8ddbb313

gnu: Add scmackerel.

* gnu/packages/dezyne.scm (scmackerel): New variable.

services: Add rspamd-service-type.

* gnu/services/mail.scm (rspamd-service-type): New variable.
* gnu/tests/mail.scm (%test-rspamd): New variable.
* doc/guix.texi: Document it.

Co-authored-by: Saku Laesvuori <saku@laesvuori.fi>
Change-Id: I7196643f087ffe9fc91aab231b69d5ed8dc9d198
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: pypy: Update to 7.3.13.

The validate-runpath error was previously reported in #57653.

Version update fixes the existing build errors.

* gnu/packages/python.scm (pypy3): Update to 7.3.13.
[source]: Update origin URI.
[arguments]<#:validate-runpath>: Disable check.
[arguments]<#:phases>: Update directory paths.

Change-Id: Ic6ab7dd77e30fa85d6fa5f000f9aa2528951b81e
Co-authored-by: Ludovic Courtès <ludo@gnu.org>

services: hpcguix-web: Add ‘configuration’ action.

* gnu/services/web.scm (hpcguix-web-shepherd-service): Define
‘config-file’ and use it.  Add ‘actions’ field.

Change-Id: I085df403270039ede3c13f21a5d60682c7510e2e

tests: childhurd: Prefer “-cpu max” over “-cpu host”.

“-cpu host” can sometimes, for unclear reasons, lead to this error from
QEMU 8.1.1:

  qemu-system-x86_64: CPU model 'host' requires KVM or HVF

This commit fixes it.

Inspired by
<https://github.com/matthewbauer/nixpkgs/commit/47b56e7c19c2e3af685ee408f02f232efb3d12b1>.

* gnu/tests/virtualization.scm (run-childhurd-test)[test]: Prefer
“-cpu max” over “-cpu host”.

Change-Id: I11a8a68bb0532fe1f3fd2c34b4a7a5fdb7bccb57

services: guix: Allow gexps evaluating to a list of build-machines.

* gnu/services/base.scm (guix-machines-files-installation): Handle
machines being a mixed list of build-machines and lists of
build-machines.
* doc/guix.texi (Base Services): Document it.

Change-Id: Ie404562ca0b564413233c3a624046da831893dc3
Co-authored-by: Ludovic Courtès <ludo@gnu.org>

gnu: libtorrent-rasterbar: Disable test_ssl test.

It times out in the ci.guix.gnu.org, so this commit disables it.  It will be
re-enabled once solution is found.

* gnu/packages/bittorrent.scm
(libtorrent-rasterbar)[arguments]<#:phases>['check]: Disable test_ssl test.

Change-Id: Ib396fd8a1786e14baad72ae892bdd0fd3fe7a180
Signed-off-by: Ludovic Courtès <ludo@gnu.org>

build-system/zig: Do not import (guix build syscalls).

* guix/build-system/zig.scm (%zig-build-system-modules): Remove (guix
build syscalls), which is unused.

Change-Id: Ie91c46c68787e0a8ffa3cbde2c5fd2294b82ed15

gnu: txr: Remove obsolete fix.

* gnu/packages/lisp.scm (txr)[arguments]: Remove 'inhibit-doc-syms-generation'
  phase.

Change-Id: Ibf29e28a82f1821cefbdc87e8bfdf3ffcd4219e5