gnu: python-sqlalchemy-utils: Update to 0.42.1.

* gnu/packages/databases.scm (python-sqlalchemy-utils): Update to 0.42.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I25bfc76aa073c23b14add53d409fbda56519301c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: emacs-xyz: Add emacs-ssh-tunnels

* gnu/packages/emacs-xyz.scm (emacs-ssh-tunnels): New variable.

Closes guix/guix#4228

Change-Id: I8b2feb93b1edb80dda7b83197e3dc57b5fc43c8b
Co-authored-by: Cayetano Santos <csantosb@inventati.org>
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: prusa-slicer: Wrap binary for GtkFilechooserdialog.

Without setting GSETTINGS_SCHEMA_DIR, opening file in prusa-slicer (or
prusa-gcodeviewer which is a symlink to the same binary) crashes with:

Settings schema 'org.gtk.Settings.FileChooser' is not installed
Trace/breakpoint trap

Closes: guix/guix#5039

* gnu/packages/engineering.scm (prusa-slicer)[arguments]: Add
’wrap-program #:phase.
[inputs]: Add bash-minimal.

Change-Id: Ic9763f031d18561aa142fee4f5f6e041f597b4d7
Modified-by: Cayetano Santos <csantosb@inventati.org>
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: python-uritemplate: Update to 4.2.0.

* gnu/packages/python-web.scm (python-uritemplate): Update to 4.2.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.
[home-page]: Update URL.

Change-Id: I29c8caa1055a11f2faa20f5c3ffd4be7e9297f14
Reviewed-by: Nguyễn Gia Phong <cnx@loang.net>
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

emacs-setup: Update repository.

The old repository and home-page no longer exists, since the project
migrated to Codeberg.

* gnu/packages/emacs-xyz.scm (emacs-setup)[source]: Switch to git-fetch.
[arguments]<#:tests?>: Disable.
[home-page]: Update.

Change-Id: I0bb1c270151bec5e2a4a3942d73b7c9485555d93
Modified-by: Cayetano Santos <csantosb@inventati.org>
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: python-pytest-astropy: Switch to pyproject.

* gnu/packages/python-check.scm (python-pytest-astropy):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I6363cc888c08bef6b679c05bdfca26af719f8c51
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pytest-xvfb: Update to 3.1.1.

* gnu/packages/python-check.scm (python-pytest-xvfb): Update to 3.1.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]: Use gexps.
<:#phases>: Improve prepare-tests phase.
[native-inputs]: Remove python-pytest-runner, add python-setuptools.

Change-Id: I7d46911037989228db944f08fd850fa7122daad0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pytest-celery: Update to 1.2.1.

* gnu/packages/python-check.scm (python-pytest-celery): Update to 1.2.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]: Use gexpes.
[home-page]: Update URL.
[propagated-inputs]: Add python-pytest-docker-tools, python-psutil
and python-tenacity.
[native-inputs]: Add python-celery-minimal, python-memcached,
python-poetry-core, python-pytest, python-pytest-cov, python-redis,
and python-requests.
[description]: Add more details.

Change-Id: I07fcb2d8ef319fe28b32902921ae2ae181a4d8c0
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-celery-minimal.

* gnu/packages/python-xyz.scm (python-celery-minimal): New variable.

Change-Id: Ib6c71748d52cdfee06c894e74bb067e8522fc6e4
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-pytest-docker-tools.

* gnu/packages/python-check.scm (python-pytest-docker-tools): New variable.

Change-Id: Icc5f93e61f32d4e00cf48db333c1270100e8b9b4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pyux: Switch to pyproject.

* gnu/packages/python-check.scm (python-pyux):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.

Change-Id: Ic1ba57fce6a1e4936a3610753229aef3ff120a2d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-xvfbwrapper: Update to 0.2.16.

* gnu/packages/python-check.scm (python-xvfbwrapper): Update to 0.2.16.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.

Change-Id: Id267bb7978a38db55e8d84fa56d19fd6b639d9f9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-xunitparser: Switch to pyproject.

* gnu/packages/python-check.scm (python-xunitparser):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.
[home-page]: Update URL.

Change-Id: I3946378b153c54f9992df1b6562282c44fc65c1a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: emacs: Do not retain reference to an extra glibc package.

This shaves ~18 MiB on the closure of ‘emacs’ and ‘emacs-no-x’.

* gnu/packages/emacs.scm (emacs-no-x)[arguments]: In
‘patch-compilation-driver’, use ‘search-input-file’ instead of
‘this-package-input’.
[inputs]: Remove ‘ld-wrapper’, ‘binutils’, and ‘libc-for-target’.

Closes: guix/guix#5029
Fixes: guix/guix#5028

Change-Id: Ib71641cf37f8ae3590b0db97c14fcd45d21080f1
Signed-off-by: Cayetano Santos <csantosb@inventati.org>

gnu: mc2mt: Fix build.

* gnu/packages/game-development.scm (mc2mt): Fix build and indentation.
[source]: Move snippet to phase.
[native-inputs]: Add python-pytest.

* gnu/packages/patches/mc2mt-add-packaging-support.patch: Update patch.

Change-Id: I3db227b726fa9dec8c09e49cada2d5f74e35576e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-anvil-parser: Update to 0.10.6-0.91a7eda.

* gnu/packages/game-development.scm (python-anvil-parser): Update to
0.10.6 91a7eda55f0fb55a948d1072896430c29d906809 commit.
[source]: Update URL, permanent redirect.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools.
[home-page]: Update URL.

Change-Id: Ie483cda52cdf86645584b835f65847fbbe737d7e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-nbt: Fix build; add tests.

* gnu/packages/game-development.scm (python-nbt-testdata): New variable.
* gnu/packages/game-development.scm (python-nbt): Fix build; add tests.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Add 'fake-download phase.
<#:test-flags>: List specific files to test.
[native-inputs]: Add python-pytest and python-setuptools.

Change-Id: I1579b0fe6d3cbe06b279c7b78f4834b6e9b849ba
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

aa

Change-Id: I02b49dca10d5bc39a585b1916434f53b8b96fbd0

gnu: lean4: Fix silent install failure

The lean4 package currently builds and installs without a visible
failure, but fails to effectvely provide its output, such as the "lean"
binary.

This is due to the install phase of the derivation failing silently as
it tries to access a bash shell using an absolute path that expects an
FHS compliant system.

To fix the issue, the relevant path in "src/stdlib.make.in", which is
used during the install phase of the of the project, is now patched out
by the package definition.

* gnu/packages/lean.scm (lean4):
[arguments] Add substitution for FHS path in "src/stdlib.make.in"

Change-Id: Ib3db9ce1fbb46175130f9b46c58c55cd65a4a1ae
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pytensor: Simplify package.

* gnu/packages/python-science.scm (python-pytensor):
[arguments] <test-flags>: Let pytest discover tests.
[phases]{pre-check}: Replace re-build extensions by deleting local
source.
[propagated-inputs]: Remove python-typing-extensions.
[native-inputs]: Remove python-wheel.

Change-Id: I42f97a93e1704856d29691f99414d4f2497723b9

python-pytensor: Skip more tests.

* gnu/packages/python-science.scm (python-pytensor)
  [arguments]<#:test-flags>: Ignore more failing tests.

Change-Id: I542ba0025bf43ebef08b2ab67c19e618b3b32621
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>