gnu: skalibs: Build reproducibly.

* gnu/packages/skarnet.scm (skalibs)[arguments]: Add #:phases.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: libjpeg-turbo: Build reproducibly.

* gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add #:configure-flags.

Co-authored-by: Z. Ren <zren@dlut.edu.cn>

gnu: python-netcdf4: Update to 1.2.9.

* gnu/packages/python.scm (python-netcdf4): Update to 1.2.9.

gnu: python-h5py: Update to 2.7.0.

* gnu/packages/python.scm (python-h5py): Update to 2.7.0.

gnu: terminology: Update to 1.1.0.

* gnu/packages/enlightenment.scm (terminology): Update to 1.1.0.
[source]: Remove bundled fonts and references to them.
[native-inputs]: Add gettext-minimal.

gnu: Update emacs-rainbow-mode to 0.13.

* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 0.13.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>

gnu: python-internetarchive: Update to 1.7.1.

* gnu/packages/web.scm (python-internetarchive): Update to 1.7.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>

gnu: python-marshmallow: Update to 3.0.0b3.

* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.

gnu: python-pylast: Update to 1.9.0.

* gnu/packages/python.scm (python-pylast): Update to 1.9.0.

gnu: lollypop: Update to 0.9.244.

* gnu/packages/gnome.scm (lollypop): Update to 0.9.244.

gnu: gspell: Update to 1.4.2.

* gnu/packages/gnome.scm (gspell): Update to 1.4.2.

gnu: imagemagick: Update to 6.9.9-9.

* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.

gnu: feh: Update to 2.19.3.

* gnu/packages/image-viewers.scm (feh): Update to 2.19.3.

gnu: perl-net-dns: Update to 1.12.

* gnu/packages/networking.scm (perl-net-dns): Update to 1.12.

gnu: zstd: Update to 1.3.1.

* gnu/packages/compression.scm (zstd): Update to 1.3.1.

gnu: openmpi: Configure without vampirtrace.

VT is obsoleted by scorep (not currently packaged) and disabling it reduces
the closure considerably.

* mpi.scm (openmpi)[arguments]: Configure without vampirtrace.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: openmpi: Modify configuration to reduce closure.

devel-headers are only for building MCA components, produce a large
closure and aren't normally packaged.  Only the affinity component of
mpi-ext is useful.

* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure
--with-devel-headers and --enable-mpi-ext=all.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: openmpi: Remove references to compiler pathnames in "_info" programs.

This reduces the closure greatly, but note that the Fortran .mod files are
gfortran version-specific, so there should probably be development packages
for each incompatible version.  (The runtime is supposed to be more-or-less
version-independent unless the libgfortran soname changes.)  There may still
be a case for a separate runtime output.

* gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>

gnu: valgrind: Add separate "doc" output.

* gnu/packages/valgrind.scm (valgrind)[outputs]: New field.
[arguments]: Add 'install-doc' phase.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>

gnu: openmpi: Remove "static" output.

--enable-static removes dynamically-loaded MCA components.

* gnu/packages/mpi.scm (openmpi)[outputs]: Remove field.
[arguments]: Don't configure with --enable-static; remove
'move-static-libraries' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>