~ruther/guix-local: gnu: r-msnbase: Fix tests that failed because of libxml2.

f54cddf750d3b3700aab7837c019457c2371c9ec — Ricardo Wurmus 4 months ago 32ea496

gnu: r-msnbase: Fix tests that failed because of libxml2.

* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Fix tests
by adding 'ensure-libxml2-works phase.

Change-Id: I555f19d5bc749cdd458af4b55a2a5a2e89c7d190

patch browse .tar.gz

1 files changed, 7 insertions(+), 0 deletions(-)

M gnu/packages/bioconductor.scm

M gnu/packages/bioconductor.scm => gnu/packages/bioconductor.scm +7 -0

@@ 11657,6 11657,13 @@ containers.")
       '(modify-phases %standard-phases
          (add-after 'unpack 'set-HOME
            (lambda _ (setenv "HOME" "/tmp")))
+         ;; For unknown reasons, the libxml2 features are misreported without
+         ;; this call prior to running BiocGenerics:::testPackage("mzR").
+         (add-after 'unpack 'ensure-libxml2-works
+           (lambda _
+             (substitute* "tests/testthat.R"
+               (("library\\(\"MSnbase\"\\)" m)
+                (string-append "XML::libxmlFeatures()\n" m)))))
          (add-after 'unpack 'delete-bad-tests
            (lambda _
              ;; Needs r-prolocdata