From f26f01e9fdb6b280c891953cbf454967f9a362fd Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 29 Apr 2025 22:40:13 +0200
Subject: [PATCH] gnu: r-bsseq: Update to 1.44.0.

* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.44.0.
[propagated-inputs]: Add r-assorthead.
[native-inputs]: Add r-doparallel and r-matrix.

Change-Id: I94a78e4883893ac72d538be11fd480d8d33d20ed
---
 gnu/packages/bioconductor.scm | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d0e8b5dc71c7ecf6d93d8ea5ac0355d7590b5918..cded03e6c6f342b515268d5077991c12126b6b20 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28093,20 +28093,21 @@ ensemble machine learning for the estimation of nuisance functions.")
 (define-public r-bsseq
   (package
     (name "r-bsseq")
-    (version "1.42.0")
+    (version "1.44.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "bsseq" version))
        (sha256
         (base32
-         "0gxjx1x2rw07615f7p9fixf4j3ph9x9b36mcb4vwg4h0avq5wfdx"))))
+         "1sscy6q119g84malz2yq1fgf8q6izrq4ljh13ycyh4zhgmbqk4rl"))))
     (properties
      '((upstream-name . "bsseq")
        (updater-extra-native-inputs . ("r-batchtools"))))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-beachmat
+     (list r-assorthead
+           r-beachmat
            r-biobase
            r-biocgenerics
            r-biocparallel
@@ -28130,7 +28131,7 @@ ensemble machine learning for the estimation of nuisance functions.")
            r-scales
            r-summarizedexperiment))
     (native-inputs
-     (list r-batchtools r-knitr r-testthat))
+     (list r-batchtools r-doparallel r-knitr r-matrix r-testthat))
     (home-page "https://github.com/hansenlab/bsseq")
     (synopsis "Analyze, manage and store bisulfite sequencing data")
     (description