~ruther/guix-local

ef1071438653536feaf35b500cb269c667432b17 — Ricardo Wurmus 1 year, 1 month ago 6a4c045
gnu: Add r-zarrdataframe.

* gnu/packages/bioinformatics.scm (r-zarrdataframe): New variable.

Change-Id: Iffe8a0fdad92e4443184642a85863b3b888fbfae
1 files changed, 29 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +29 -0
@@ 22560,6 22560,35 @@ datasets.  @code{VoltRon} visualizes and analyzes regions of interests (ROIs),
spots, cells and even molecules.")
      (license license:expat))))

(define-public r-zarrdataframe
  (let ((commit "fa89bd272ebc33a90edd4016c6f87f966102a4f5")
        (revision "1"))
    (package
      (name "r-zarrdataframe")
      (version (git-version "0.0.0" revision commit))
      (source
       (origin
         (method git-fetch)
         (uri (git-reference
               (url "https://github.com/BIMSBbioinfo/ZarrDataFrame")
               (commit commit)))
         (file-name (git-file-name name version))
         (sha256
          (base32 "121vyqwyg773l77xvx0rvrf0dyn26g3b01v42pz0a8lj4qmk86vn"))))
      (properties `((upstream-name . "ZarrDataFrame")))
      (build-system r-build-system)
      (propagated-inputs (list r-biocgenerics r-delayedarray r-pizzarr
                               r-s4vectors r-zarrarray))
      (native-inputs (list r-knitr))
      (home-page "https://github.com/BIMSBbioinfo/ZarrDataFrame")
      (synopsis "Bioconductor-friendly Bindings for Zarr")
      (description
       "This package implements bindings for zarr store that are compatible
with Bioconductor S4 data structures, namely the @code{DataFrame} and
@code{DelayedArray}.  This allows Zarr-backed data to be easily used as data
frames with arbitrary sets of columns.")
      (license license:expat))))

(define-public r-zarrarray
  (let ((commit "508d87193b20feba8cd24fa96b33e1bc9cc49958")
        (revision "1"))