From ee0663e3d38e7a2051ea25dd2ea2254528779361 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 9 May 2025 23:41:51 +0200
Subject: [PATCH] gnu: r-lightgbm: Update to 4.6.0.

* gnu/packages/cran.scm (r-lightgbm): Update to 4.6.0.
[arguments]: Add phase 'disable-bad-test.

Change-Id: Ic6abcd547372c34bc823371156a725e3a66cd512
---
 gnu/packages/cran.scm | 14 ++++++++++++--
 1 file changed, 12 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6c8fa115e1185e71cdd021510c13d9b3da546a1f..c6e2874ee7c4959a5f58ae78f9832afd3bfd78b4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -46197,16 +46197,26 @@ input.")
 (define-public r-lightgbm
   (package
     (name "r-lightgbm")
-    (version "4.5.0")
+    (version "4.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lightgbm" version))
        (sha256
         (base32
-         "1bnyhwmmsacl0g1hhgjzdfh2kdxjqfm0r7cs5nz8vk1nrwyck02r"))))
+         "1221rp3ml4dggk4i7w9f58437dm3myfwapll21i8fmnzjapl50zr"))))
     (properties `((upstream-name . "lightgbm")))
     (build-system r-build-system)
+    (arguments
+     (list
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'disable-bad-test
+           (lambda _
+             ;; This test produces warnings.
+             (substitute* "tests/testthat/test_parameters.R"
+               ((".*training should warn if you use.*" m)
+                (string-append m "skip('skip')\n"))))))))
     (propagated-inputs
      (list r-data-table r-jsonlite r-matrix r-r6))
     (native-inputs