~ruther/guix-local

e2b927993efc9254a941d035fb17f9ebaf330eac — Ricardo Wurmus 8 years ago 96a392a
gnu: Add r-gqtlbase.

* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
1 files changed, 35 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +35 -0
@@ 9792,6 9792,41 @@ gene identifier conversion and mapping homologous genes across related
organisms via the @code{g:Profiler} toolkit.")
    (license license:gpl2+)))

(define-public r-gqtlbase
  (package
    (name "r-gqtlbase")
    (version "1.10.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "gQTLBase" version))
       (sha256
        (base32
         "1756vfcj2dkkgcmfkkg7qdaig36dv9gfvpypn9rbrky56wm1p035"))))
    (properties `((upstream-name . "gQTLBase")))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-batchjobs" ,r-batchjobs)
       ("r-bbmisc" ,r-bbmisc)
       ("r-biocgenerics" ,r-biocgenerics)
       ("r-bit" ,r-bit)
       ("r-doparallel" ,r-doparallel)
       ("r-ff" ,r-ff)
       ("r-ffbase" ,r-ffbase)
       ("r-foreach" ,r-foreach)
       ("r-genomicfiles" ,r-genomicfiles)
       ("r-genomicranges" ,r-genomicranges)
       ("r-rtracklayer" ,r-rtracklayer)
       ("r-s4vectors" ,r-s4vectors)
       ("r-summarizedexperiment" ,r-summarizedexperiment)))
    (home-page "https://bioconductor.org/packages/gQTLBase")
    (synopsis "Infrastructure for eQTL, mQTL and similar studies")
    (description
     "The purpose of this package is to simplify the storage and interrogation
of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
and more.")
    (license license:artistic2.0)))

(define-public r-qvalue
  (package
    (name "r-qvalue")