@@ 1880,6 1880,43 @@ support for reading and writing various compression algorithms including:
@url{http://facebook.github.io/zstd/,Zstandard}.")
(license license:bsd-3))))
+(define python-asdf-time-schemas
+ ;; TODO: No release, change to tag when it's ready.
+ (let ((commit "a3062066ee70f1b934f7339d1ce96a5c5f61f055")
+ (revision "3"))
+ (package
+ (name "python-asdf-time-schemas")
+ (version (git-version "0.0.1" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/asdf-format/asdf-time-schemas")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1i8lm2d18r6fadsch52dxc2zp1swkfa8w40s03albn7p290n4a97"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; Dependency cycle with python-asdf
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
+ (native-inputs (list python-setuptools-scm))
+ (propagated-inputs (list python-asdf-standard
+ python-asdf-unit-schemas
+ python-importlib-resources))
+ (home-page "https://github.com/asdf-format/asdf-fits-schemas")
+ (synopsis "Schemas for storing time in ASDF")
+ (description
+ "This package provides ASDF schemas for validating time tags.")
+ (license license:bsd-3))))
+
(define-public python-asdf-zarr
(package
(name "python-asdf-zarr")
@@ 2478,6 2515,111 @@ celestial-to-terrestrial coordinate transformations.")
(delete python-matplotlib
python-scipy)))))
+(define-public python-astroquery
+ (package
+ (name "python-astroquery")
+ (version "0.4.9.post1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "astroquery" version))
+ (sha256
+ (base32 "15viynwq96gyb12q894fi2j4jlzmba3lk86l469ixmrnj3qnn4aw"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "--pyargs" "astroquery"
+ "-m" "not remote_data"
+ ;; Some tests failed with parallel run, see
+ ;; <https://github.com/astropy/astroquery/issues/2968>.
+ ;; "-n" "auto"
+ "-k" (string-append
+ ;; Failed: DID NOT RAISE <class
+ ;; 'astropy.utils.exceptions.AstropyDeprecationWarning'>
+ "not test_raises_deprecation_warning"))
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ ;; Some tests require write access to $HOME.
+ (setenv "HOME" "/tmp")
+ ;; Step out of the source directory to avoid interference;
+ ;; we want to run the installed code with extensions etc.
+ (with-directory-excursion "/tmp"
+ (apply invoke "pytest" "-v" test-flags))))))))
+ (native-inputs
+ (list nss-certs-for-test
+ python-matplotlib
+ python-pytest-astropy
+ python-pytest-dependency
+ python-pytest-doctestplus
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-astropy-healpix
+ python-beautifulsoup4
+ python-boto3
+ python-html5lib
+ python-keyring
+ ;; python-mocpy : Not packed yet, optional and Rust is required
+ python-numpy
+ python-pyvo
+ python-regions
+ python-requests))
+ (home-page "https://astroquery.readthedocs.io/en/latest/index.html")
+ (synopsis "Access online astronomical data resources")
+ (description
+ "Astroquery is a package that contains a collection of tools to access
+online Astronomical data. Each web service has its own sub-package.")
+ (license license:bsd-3)))
+
+(define-public python-astroscrappy
+ (package
+ (name "python-astroscrappy")
+ (version "1.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "astroscrappy" version))
+ (sha256
+ (base32 "0r2alg8imr201ykjsvr6y43bzw8mwbc4ddprn8f6qfw9k4hsx8ff"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags #~(list "--pyargs" "astroscrappy")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'preparations
+ (lambda _ (setenv "HOME" "/tmp")))
+ (add-before 'install 'writable-compiler
+ (lambda _ (make-file-writable "astroscrappy/_compiler.c")))
+ (add-before 'check 'tests-preparation
+ (lambda _
+ (make-file-writable "astroscrappy/_compiler.c")
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (native-inputs
+ (list python-cython-3
+ python-extension-helpers
+ python-pytest-astropy
+ python-scipy
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy))
+ (home-page "https://github.com/astropy/astroscrappy")
+ (synopsis "Speedy Cosmic Ray Annihilation Package in Python")
+ (description
+ "Astro-SCRAPPY is designed to detect cosmic rays in images (numpy
+arrays), based on Pieter van Dokkum's L.A.Cosmic algorithm. Much of this was
+originally adapted from cosmics.py written by Malte Tewes. This is designed to
+be as fast as possible so some of the readability has been sacrificed,
+specifically in the C code.")
+ (license license:bsd-3)))
+
(define-public python-baseband
(package
(name "python-baseband")
@@ 2758,42 2900,6 @@ attempting to maintain ISTP compliance
@end itemize")
(license license:expat)))
-(define-public python-ci-watson
- (package
- (name "python-ci-watson")
- (version "0.8.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "ci_watson" version))
- (sha256
- (base32 "1rlhs8y0splmzr76z1s35zl68qm748nlayha8m81b0zhkhicxvhg"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'patch-pypojrect-toml
- (lambda _
- (substitute* "setup.cfg"
- ;; ImportError: Error importing plugin " no:legacypath": No
- ;; module named ' no:legacypath'
- (("-p no:legacypath") "")))))))
- (native-inputs
- (list python-pytest-astropy-header
- python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-crds
- python-pytest
- python-readchar
- python-requests))
- (home-page "https://github.com/spacetelescope/ci_watson")
- (synopsis "Helper functions for STScI software")
- (description
- "This package contains a helper functionality to test ROMAN and JWST.")
- (license license:bsd-3)))
-
(define-public python-cesium
(package
(name "python-cesium")
@@ 2834,6 2940,42 @@ attempting to maintain ISTP compliance
"Cesium is a library for time-series feature extraction and processing.")
(license license:bsd-3)))
+(define-public python-ci-watson
+ (package
+ (name "python-ci-watson")
+ (version "0.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ci_watson" version))
+ (sha256
+ (base32 "1rlhs8y0splmzr76z1s35zl68qm748nlayha8m81b0zhkhicxvhg"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-pypojrect-toml
+ (lambda _
+ (substitute* "setup.cfg"
+ ;; ImportError: Error importing plugin " no:legacypath": No
+ ;; module named ' no:legacypath'
+ (("-p no:legacypath") "")))))))
+ (native-inputs
+ (list python-pytest-astropy-header
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-crds
+ python-pytest
+ python-readchar
+ python-requests))
+ (home-page "https://github.com/spacetelescope/ci_watson")
+ (synopsis "Helper functions for STScI software")
+ (description
+ "This package contains a helper functionality to test ROMAN and JWST.")
+ (license license:bsd-3)))
+
(define-public python-cmyt
(package
(name "python-cmyt")
@@ 4755,6 4897,38 @@ export the simulated X-ray events to other software packages to simulate the
end products of specific X-ray observatories.")
(license license:bsd-3)))
+(define-public python-regularizepsf
+ (package
+ (name "python-regularizepsf")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "regularizepsf" version))
+ (sha256
+ (base32 "1ial8i9nshhpn3lsgnjqm94dfrzxwz2qgpd8bjzmml1ls0j7sm9v"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-pytest-mpl
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-h5py
+ python-matplotlib
+ python-numpy
+ python-scikit-image
+ python-scipy
+ python-sep-pjw))
+ (home-page "https://github.com/punch-mission/regularizepsf")
+ (synopsis "Point spread function modeling and regularization")
+ (description
+ "This package implements functionality of @acronym{Point Spread Function,
+PSF} describing how the optical system spreads light from sources.")
+ (license license:expat)))
+
(define-public python-sirilic
(package
(name "python-sirilic")
@@ 4795,6 4969,49 @@ and the options
@end itemize")
(license license:gpl3)))
+(define-public python-skyfield
+ (package
+ (name "python-skyfield")
+ (version "1.53")
+ (source
+ (origin
+ (method git-fetch) ; PyPI tarball lacks test data
+ (uri (git-reference
+ (url "https://github.com/skyfielders/python-skyfield")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0jj0bjvzlfxr4qaq6mnybhwabhz9n70afi8sd6a26wl79s5bw1q9"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-m" "assay" "--batch" "skyfield.tests")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (when tests?
+ (with-directory-excursion "ci"
+ (apply invoke "python" test-flags))))))))
+ (native-inputs
+ (list nss-certs-for-test
+ python-assay
+ python-pandas
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-certifi
+ python-jplephem
+ python-numpy
+ python-sgp4))
+ (home-page "https://rhodesmill.org/skyfield/")
+ (synopsis "Astronomy for Python")
+ (description
+ "Skyfield computes positions for the stars, planets, and satellites in
+orbit around the Earth.")
+ (license license:expat)))
+
(define-public python-sncosmo
(package
(name "python-sncosmo")
@@ 5060,111 5277,6 @@ instruments.")
(license (list license:bsd-3 ; licenses/LICENSE.rst, same as python-astropy
license:expat)))) ; licenses/KOSMOS_LICENSE
-(define-public python-astroquery
- (package
- (name "python-astroquery")
- (version "0.4.9.post1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "astroquery" version))
- (sha256
- (base32 "15viynwq96gyb12q894fi2j4jlzmba3lk86l469ixmrnj3qnn4aw"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list "--pyargs" "astroquery"
- "-m" "not remote_data"
- ;; Some tests failed with parallel run, see
- ;; <https://github.com/astropy/astroquery/issues/2968>.
- ;; "-n" "auto"
- "-k" (string-append
- ;; Failed: DID NOT RAISE <class
- ;; 'astropy.utils.exceptions.AstropyDeprecationWarning'>
- "not test_raises_deprecation_warning"))
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? test-flags #:allow-other-keys)
- (when tests?
- ;; Some tests require write access to $HOME.
- (setenv "HOME" "/tmp")
- ;; Step out of the source directory to avoid interference;
- ;; we want to run the installed code with extensions etc.
- (with-directory-excursion "/tmp"
- (apply invoke "pytest" "-v" test-flags))))))))
- (native-inputs
- (list nss-certs-for-test
- python-matplotlib
- python-pytest-astropy
- python-pytest-dependency
- python-pytest-doctestplus
- python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-astropy-healpix
- python-beautifulsoup4
- python-boto3
- python-html5lib
- python-keyring
- ;; python-mocpy : Not packed yet, optional and Rust is required
- python-numpy
- python-pyvo
- python-regions
- python-requests))
- (home-page "https://astroquery.readthedocs.io/en/latest/index.html")
- (synopsis "Access online astronomical data resources")
- (description
- "Astroquery is a package that contains a collection of tools to access
-online Astronomical data. Each web service has its own sub-package.")
- (license license:bsd-3)))
-
-(define-public python-astroscrappy
- (package
- (name "python-astroscrappy")
- (version "1.2.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "astroscrappy" version))
- (sha256
- (base32 "0r2alg8imr201ykjsvr6y43bzw8mwbc4ddprn8f6qfw9k4hsx8ff"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags #~(list "--pyargs" "astroscrappy")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'preparations
- (lambda _ (setenv "HOME" "/tmp")))
- (add-before 'install 'writable-compiler
- (lambda _ (make-file-writable "astroscrappy/_compiler.c")))
- (add-before 'check 'tests-preparation
- (lambda _
- (make-file-writable "astroscrappy/_compiler.c")
- (invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (native-inputs
- (list python-cython-3
- python-extension-helpers
- python-pytest-astropy
- python-scipy
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-numpy))
- (home-page "https://github.com/astropy/astroscrappy")
- (synopsis "Speedy Cosmic Ray Annihilation Package in Python")
- (description
- "Astro-SCRAPPY is designed to detect cosmic rays in images (numpy
-arrays), based on Pieter van Dokkum's L.A.Cosmic algorithm. Much of this was
-originally adapted from cosmics.py written by Malte Tewes. This is designed to
-be as fast as possible so some of the readability has been sacrificed,
-specifically in the C code.")
- (license license:bsd-3)))
-
(define-public python-hvpy
(package
(name "python-hvpy")
@@ 5658,38 5770,6 @@ interest, and which require portability between platforms or ease of scripting."
Virtual observatory (VO) using Python.")
(license license:bsd-3)))
-(define-public python-regularizepsf
- (package
- (name "python-regularizepsf")
- (version "1.0.2")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "regularizepsf" version))
- (sha256
- (base32 "1ial8i9nshhpn3lsgnjqm94dfrzxwz2qgpd8bjzmml1ls0j7sm9v"))))
- (build-system pyproject-build-system)
- (native-inputs
- (list python-pytest
- python-pytest-mpl
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-h5py
- python-matplotlib
- python-numpy
- python-scikit-image
- python-scipy
- python-sep-pjw))
- (home-page "https://github.com/punch-mission/regularizepsf")
- (synopsis "Point spread function modeling and regularization")
- (description
- "This package implements functionality of @acronym{Point Spread Function,
-PSF} describing how the optical system spreads light from sources.")
- (license license:expat)))
-
(define-public python-reproject
(package
(name "python-reproject")
@@ 6838,43 6918,6 @@ implementation package such as asdf-astropy.")
"This package provides ASDF schemas for validating FITS tags.")
(license license:bsd-3))))
-(define python-asdf-time-schemas
- ;; TODO: No release, change to tag when it's ready.
- (let ((commit "a3062066ee70f1b934f7339d1ce96a5c5f61f055")
- (revision "3"))
- (package
- (name "python-asdf-time-schemas")
- (version (git-version "0.0.1" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/asdf-format/asdf-time-schemas")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1i8lm2d18r6fadsch52dxc2zp1swkfa8w40s03albn7p290n4a97"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- ;; Dependency cycle with python-asdf
- #:tests? #f
- #:phases
- #~(modify-phases %standard-phases
- (add-before 'build 'set-version
- (lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
- (native-inputs (list python-setuptools-scm))
- (propagated-inputs (list python-asdf-standard
- python-asdf-unit-schemas
- python-importlib-resources))
- (home-page "https://github.com/asdf-format/asdf-fits-schemas")
- (synopsis "Schemas for storing time in ASDF")
- (description
- "This package provides ASDF schemas for validating time tags.")
- (license license:bsd-3))))
-
(define python-asdf-unit-schemas
(package
(name "python-asdf-unit-schemas")
@@ 7282,49 7325,6 @@ for Roman since FITS format data files will not be used by the Roman calibration
pipelines.")
(license license:bsd-3)))
-(define-public python-skyfield
- (package
- (name "python-skyfield")
- (version "1.53")
- (source
- (origin
- (method git-fetch) ; PyPI tarball lacks test data
- (uri (git-reference
- (url "https://github.com/skyfielders/python-skyfield")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0jj0bjvzlfxr4qaq6mnybhwabhz9n70afi8sd6a26wl79s5bw1q9"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list "-m" "assay" "--batch" "skyfield.tests")
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? test-flags #:allow-other-keys)
- (when tests?
- (with-directory-excursion "ci"
- (apply invoke "python" test-flags))))))))
- (native-inputs
- (list nss-certs-for-test
- python-assay
- python-pandas
- python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-certifi
- python-jplephem
- python-numpy
- python-sgp4))
- (home-page "https://rhodesmill.org/skyfield/")
- (synopsis "Astronomy for Python")
- (description
- "Skyfield computes positions for the stars, planets, and satellites in
-orbit around the Earth.")
- (license license:expat)))
-
(define-public python-stsci-image
(package
(name "python-stsci-image")