~ruther/guix-local

d4ebd06e80f226ffb736f5b494077cb691fb2c9e — Sharlatan Hellseher 2 months ago e0ee924 
gnu: python-pomegranate: Update to 1.1.0.

* gnu/packages/python-xyz.scm (python-pomegranate): Update to 1.1.0.
[source]: Switch to git-fetch providing tests.
[arguments] <tests?, test-flags>: Enable them.
[propagated-inputs]: Remove python-joblib and python-pyyaml; add
python-apricot-select, python-scikit-learn, and python-pytorch.
[native-inputs]: Remove python-pandas and python-wheel; add
python-pytest.

Change-Id: Idf53aff2124c98fd7dc1172a31028a57347d2a4b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
patch browse .tar.gz 
1 files changed, 52 insertions(+), 23 deletions(-)

M gnu/packages/python-xyz.scm

M gnu/packages/python-xyz.scm => gnu/packages/python-xyz.scm +52 -23
@@ 7459,34 7459,63 @@ a certain expected condition.")
(define-public python-pomegranate
  (package
    (name "python-pomegranate")
    (version "0.14.8")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "pomegranate" version))
              (sha256
               (base32
                "0gb9srkbxzlkjyfizvxkw5y0bvnfcyiaxapz0hrdaba8j096b5i2"))
              (modules '((guix build utils)))
              ;; Delete generated Cython C files.
              (snippet
               '(for-each delete-file (find-files "." "\\.c$")))))
    (version "1.1.0")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
              (url "https://github.com/jmschrei/pomegranate")
              (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32 "0arx5wik4ywna7k7g5y3ggwz98fl1hgap0278pph3c77ap8afqd7"))))
    (build-system pyproject-build-system)
    (arguments
     (list
      ;; XXX: Update to python@3.11 broke some python-nose functionality.
      ;; Tests are broken but the package itself is most likely fine.
      #:tests? #f))
    (propagated-inputs
     (list python-joblib
           python-networkx
           python-numpy
           python-pyyaml
           python-scipy))
      ;; tests: 830 passed, 19 deselected, 529 warnings
      #:test-flags
      #~(list #$@(map (lambda (test) (string-append "--deselect="
                                                    "tests/distributions/"
                                                    test))
                      ;; _pickle.UnpicklingError: Weights only load failed.
                      (list "test_bernoulli.py::test_serialization"
                            "test_categorical.py::test_serialization"
                            "test_exponential.py::test_serialization"
                            "test_gamma.py::test_serialization"
                            "test_independent_component.py::test_serialization"
                            "test_normal_diagonal.py::test_serialization"
                            "test_normal_full.py::test_serialization"
                            "test_poisson.py::test_serialization"
                            "test_student_t.py::test_serialization"
                            "test_uniform.py::test_serialization"
                            ;; Arrays are not almost equal to 3 decimals
                            "test_categorical.py::test_sample"
                            "test_independent_component.py::test_sample"
                            "test_joint_categorical.py::test_sample"
                            "test_joint_categorical.py::test_sample"))
              #$@(map (lambda (test) (string-append "--deselect="
                                                    "tests/"
                                                    test))
                      ;; _pickle.UnpicklingError: Weights only load failed.
                      (list "test_bayes_classifier.py::test_serialization"
                            "test_gmm.py::test_serialization"
                            "test_kmeans.py::test_serialization"
                            ;; Arrays are not almost equal to 3 decimals
                            "test_bayesian_network.py::test_sample"
                            "test_gmm.py::test_sample"
                            "test_markov_chain.py::test_sample"
                            "test_markov_chain.py::test_sample")))))
    (native-inputs
     (list python-cython
           python-pandas
           python-setuptools
           python-wheel))
           python-pytest
           python-setuptools))
    (propagated-inputs
     (list python-apricot-select
	   python-networkx
	   python-numpy
	   python-scikit-learn
	   python-scipy
	   python-pytorch))
    (home-page "https://pypi.python.org/pypi/pomegranate/")
    (synopsis "Graphical models library for Python")
    (description