@@ 73,6 73,7 @@
#:use-module (gnu packages boost)
#:use-module (gnu packages build-tools)
#:use-module (gnu packages c)
+ #:use-module (gnu packages certs)
#:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
@@ 82,6 83,7 @@
#:use-module (gnu packages cran)
#:use-module (gnu packages databases)
#:use-module (gnu packages datastructures)
+ #:use-module (gnu packages digest)
#:use-module (gnu packages docbook)
#:use-module (gnu packages documentation)
#:use-module (gnu packages elf)
@@ 2225,6 2227,165 @@ from multiple records.")
"RTree is a Python package with bindings for @code{libspatialindex}.")
(license license:expat)))
+(define-public python-scitools-iris
+ (package
+ (name "python-scitools-iris")
+ (version "3.11.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "scitools_iris" version))
+ (sha256
+ (base32 "19qwmi7amr8q2dd17scch4zvdly3vqc23v5zwpq8qw45vmldxfrq"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "--numprocesses" (number->string (parallel-job-count))
+ "--pyargs" "iris"
+ "-k" (string-join
+ ;; Tests requiring additional data files distributed
+ ;; separately from this project from
+ ;; <https://github.com/SciTools/iris-test-data> or network
+ ;; access.
+ ;;
+ ;; XXX: Review this list and try to ignore by files
+ ;; instead in individual tests.
+ (list "not test_both_transposed"
+ "test_2d_coords_contour"
+ "test_2d_plain_latlon"
+ "test_2d_plain_latlon_on_polar_map"
+ "test_2d_rotated_latlon"
+ "test_2d_rotated_latlon"
+ "test_ancillary_variables_pass_0"
+ "test_auxiliary_coordinates_pass_0"
+ "test_bounds"
+ "test_bounds_pass_0"
+ "test_broadcast_cubes"
+ "test_broadcast_cubes_weighted"
+ "test_broadcast_transpose_cubes_weighted"
+ "test_cell_measures_pass_0"
+ "test_common_mask_broadcast"
+ "test_common_mask_simple"
+ "test_compatible_cubes"
+ "test_compatible_cubes_weighted"
+ "test_coord_transposed"
+ "test_coordinates_pass_0"
+ "test_cube_transposed"
+ "test_data_pass_0"
+ "test_destructor"
+ "test_formula_terms_pass_0"
+ "test_global_attributes_pass_0"
+ "test_grid_mapping_pass_0"
+ "test_grouped_dim"
+ "test_incompatible_cubes"
+ "test_izip_different_shaped_coords"
+ "test_izip_different_valued_coords"
+ "test_izip_extra_coords_both_slice_dims"
+ "test_izip_extra_coords_slice_dim"
+ "test_izip_extra_coords_step_dim"
+ "test_izip_extra_dim"
+ "test_izip_input_collections"
+ "test_izip_missing_slice_coords"
+ "test_izip_nd_non_ortho"
+ "test_izip_nd_ortho"
+ "test_izip_no_args"
+ "test_izip_no_common_coords_on_step_dim"
+ "test_izip_onecube_height_lat_long"
+ "test_izip_onecube_lat"
+ "test_izip_onecube_lat_lon"
+ "test_izip_onecube_no_coords"
+ "test_izip_ordered"
+ "test_izip_returns_iterable"
+ "test_izip_same_cube_lat"
+ "test_izip_same_cube_lat_lon"
+ "test_izip_same_cube_no_coords"
+ "test_izip_same_dims_single_coord"
+ "test_izip_same_dims_two_coords"
+ "test_izip_subcube_of_same"
+ "test_izip_unequal_slice_coords"
+ "test_izip_use_in_analysis"
+ "test_label_dim_end"
+ "test_label_dim_start"
+ "test_lenient_handling"
+ "test_load_pp_timevarying_orography"
+ "test_mdtol"
+ "test_netcdf_v3"
+ "test_no_delayed_writes"
+ "test_no_transpose"
+ "test_non_existent_coord"
+ "test_perfect_corr"
+ "test_perfect_corr_all_dims"
+ "test_python_versions"
+ "test_realfile_loadsave_equivalence"
+ "test_realise_data"
+ "test_realise_data_multisource"
+ "test_scheduler_types"
+ "test_single_coord"
+ "test_stream"
+ "test_stream_multisource"
+ "test_stream_multisource__manychunks"
+ "test_time_of_writing"
+ "test_ungrouped_dim"
+ "test_variable_attribute_touch_pass_0"
+ "test_variable_cf_group_pass_0"
+ "test_weight_error")
+ " and not "))
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; GeoVista is not packaged yet, "--ignore" option did not work to
+ ;; skip test files.
+ (add-after 'unpack 'delete-failing-test-files
+ (lambda _
+ (with-directory-excursion "lib/iris/tests"
+ (for-each delete-file-recursively
+ (list "integration/experimental/geovista"
+ "unit/experimental/geovista")))))
+ (add-after 'unpack 'fix-paths
+ (lambda _
+ (let ((netcdf #$(this-package-native-input "netcdf")))
+ (substitute* (list "lib/iris/tests/__init__.py"
+ "lib/iris/tests/stock/netcdf.py")
+ (("env_bin_path\\(\"ncgen\"\\)")
+ (format #f "'~a/bin/ncgen'" netcdf))
+ (("env_bin_path\\(\"ncdump\"\\)")
+ (format #f "'~a/bin/ncdump'" netcdf))))))
+ (add-before 'check 'pre-check
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list netcdf ; for ncdump and ncgen
+ nss-certs-for-test
+ python-distributed
+ python-filelock
+ python-imagehash
+ python-pytest-xdist
+ python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-cartopy
+ python-cf-units
+ python-cftime
+ python-dask
+ ;; python-geovista ; optinoal, not packaged yet
+ python-matplotlib
+ python-netcdf4
+ python-numpy
+ python-pyproj
+ python-scipy
+ python-shapely
+ python-xxhash))
+ (home-page "https://github.com/SciTools/iris")
+ (synopsis "Earth science data analysing and visualising library")
+ (description
+ "Iris is a Python library for analysing and visualising Earth science
+data. It excels when working with multi-dimensional Earth Science data, where
+tabular representations become unwieldy and inefficient. Iris implements a
+data model based on the CF conventions.")
+ (license license:lgpl3+)))
+
(define-public java-jmapviewer
(package
(name "java-jmapviewer")