~ruther/guix-local: import cran: Exclude experiment packages in predicate "bioconductor-package?".

c9ffa91fd346eb832c05afea5b523c8da5b47500 — Ricardo Wurmus 9 years ago 7c9fcb0

import cran: Exclude experiment packages in predicate "bioconductor-package?".

* guix/import/cran.scm (bioconductor-package?): Exclude experiment packages,
because they cannot be updated with the default bioconductor updater.

patch browse .tar.gz

1 files changed, 3 insertions(+), 1 deletions(-)

M guix/import/cran.scm

M guix/import/cran.scm => guix/import/cran.scm +3 -1

@@ 433,7 433,9 @@ dependencies."
                           ;; the Github mirror, so we have to exclude them
                           ;; from the set of bioconductor packages that can be
                           ;; updated automatically.
-                          (not (string-contains uri "/data/annotation/"))))))
+                          (not (string-contains uri "/data/annotation/"))
+                          ;; Experiment packages are in a separate repository.
+                          (not (string-contains uri "/data/experiment/"))))))
     (and (string-prefix? "r-" (package-name package))
          (match (and=> (package-source package) origin-uri)
            ((? string? uri)