@@ 1136,6 1136,56 @@ data. It also provides the bgzip, htsfile, and tabix utilities.")
;; the rest is released under the Expat license
(license (list license:expat license:bsd-3))))
+(define-public idr
+ (package
+ (name "idr")
+ (version "2.0.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/nboley/idr/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1k3x44biak00aiv3hpm1yd6nn4hhp7n0qnbs3zh2q9sw7qr1qj5r"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after
+ 'install 'wrap-program
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (python-version (string-take (string-take-right
+ (assoc-ref inputs "python") 5) 3))
+ (path (string-join
+ (map (lambda (name)
+ (string-append (assoc-ref inputs name)
+ "/lib/python" python-version
+ "/site-packages"))
+ '("python-scipy"
+ "python-numpy"
+ "python-matplotlib"))
+ ":")))
+ (wrap-program (string-append out "/bin/idr")
+ `("PYTHONPATH" ":" prefix (,path))))
+ #t)))))
+ (inputs
+ `(("python-scipy" ,python-scipy)
+ ("python-numpy" ,python-numpy)
+ ("python-matplotlib" ,python-matplotlib)))
+ (native-inputs
+ `(("python-cython" ,python-cython)
+ ("python-setuptools" ,python-setuptools)))
+ (home-page "https://github.com/nboley/idr")
+ (synopsis "Tool to measure the irreproducible discovery rate (IDR)")
+ (description
+ "The IDR (Irreproducible Discovery Rate) framework is a unified approach
+to measure the reproducibility of findings identified from replicate
+experiments and provide highly stable thresholds based on reproducibility.")
+ (license license:gpl3+)))
+
(define-public macs
(package
(name "macs")