~ruther/guix-local

c3b9d03267c38adb0bf1f9c997ef2ebe47a5db19 — Andreas Enge 6 months ago 0839247
gnu: Remove python-scikit-learn-extra.

* gnu/packages/machine-learning.scm (python-scikit-learn-extra): Delete
variable.

Fixes: guix/guix#2920
Change-Id: I4d45c6c459f438c3f266a445f2ded07f00652d77
1 files changed, 0 insertions(+), 65 deletions(-)

M gnu/packages/machine-learning.scm
M gnu/packages/machine-learning.scm => gnu/packages/machine-learning.scm +0 -65
@@ 2176,71 2176,6 @@ data analysis.")
                ;; (<...>/_cython_blas.cpython-311-x86_64-linux-gnu.so)
                (delete-file-recursively "sklearn/utils/tests/test_cython_blas.py")))))))))

(define-public python-scikit-learn-extra
  ;; This commit fixes an incompatibility with newer versions of scikit-learn
  (let ((commit "0f95d8dda4c69f9de4fb002366041adcb1302f3b")
        (revision "1"))
    (package
      (name "python-scikit-learn-extra")
      (version (git-version "0.3.0" revision commit))
      (source
       (origin
         (method git-fetch)
         (uri (git-reference
               (url "https://github.com/scikit-learn-contrib/scikit-learn-extra")
               (commit commit)))
         (file-name (git-file-name name version))
         (sha256
          (base32 "0a248sff1psfwzmngj465gzyisq20d83nzpwpq2cspxhih51m6j9"))))
      (build-system pyproject-build-system)
      (arguments
       (list
        #:test-flags
        ;; ignore tests that require network
        '(list "--pyargs" "sklearn_extra"
               "-k" (string-append "not test_build"
                                   ;; The error message format has changed,
                                   ;; but the behavior itself is still the
                                   ;; same.
                                   " and not test_parameter_validation"
                                   ;; exceptions must be derived from Warning,
                                   ;; not <class 'NoneType'>
                                   " and not test_seuclidean"))
        #:phases
        #~(modify-phases %standard-phases
            (add-after 'build 'build-ext
              (lambda _
                (invoke "python" "setup.py" "build_ext"
                        "--inplace")))
            (replace 'check
              (lambda* (#:key tests? test-flags #:allow-other-keys)
                (when tests?
                  ;; Restrict OpenBLAS threads to prevent segfaults while testing!
                  (setenv "OPENBLAS_NUM_THREADS" "1")

                  ;; Some tests require write access to $HOME.
                  (setenv "HOME" "/tmp")

                  ;; Step out of the source directory to avoid interference;
                  ;; we want to run the installed code with extensions etc.
                  (with-directory-excursion "/tmp"
                    (apply invoke "pytest" "-vv" test-flags))))))))
      (propagated-inputs
       (list python-numpy
             python-scikit-learn
             python-scipy
             python-packaging))
      (native-inputs (list python-pytest python-pytest-cov python-cython
                           python-setuptools python-wheel))
      (home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra")
      (synopsis "Set of tools for scikit-learn")
      (description
       "This package provides a Python module for machine learning that extends
scikit-learn.  It includes algorithms that are useful but do not satisfy the
scikit-learn inclusion criteria, for instance due to their novelty or lower
citation number.")
      (license license:bsd-3))))

(define-public python-mord
  (package
    (name "python-mord")