From b9eeb895428d8c950b00242a4cd03c3a58811fd4 Mon Sep 17 00:00:00 2001
From: Janneke Nieuwenhuizen <janneke@gnu.org>
Date: Mon, 27 Oct 2025 18:14:42 +0200
Subject: [PATCH] gnu: Add python-modbedtools.

Change-Id: Ia35e2e1640e44766960b28f74786f8371878990e
---
 gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1d518d5ac7ca7f7124d4e5023fb76bc6f150cceb..0815c5bc6e740f2bda1a0d904bc70cd08416b635 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8194,6 +8194,31 @@ data.  EpiScanpy is the epigenomic extension of the very popular scRNA-seq
 analysis tool Scanpy (Genome Biology, 2018).")
     (license license:bsd-3)))
 
+(define-public python-modbedtools
+  (package
+    (name "python-modbedtools")
+    (version "0.1.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "modbedtools" version))
+       (sha256
+        (base32 "0c2f8fl0mi3wcvv4fygkf6jj1d0zavhc7v9wwbqchpyb7m23cmp9"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs (list python-pysam))
+    (native-inputs (list python-pytest
+                         python-setuptools
+                         python-setuptools-scm
+                         python-wheel))
+    (arguments (list #:tests? #f)) ;No tests
+    (home-page "https://github.com/lidaof/modbedtools")
+    (synopsis
+     "Generate modbed track files for visualization on WashU Epigenome Browser")
+    (description
+     "modbedtools is a python command line tool to generate modbed files for
+visualization on the WashU Epigenome Browser.")
+    (license license:expat)))
+
 (define-public python-ete3
   (package
     (name "python-ete3")