@@ 9708,6 9708,37 @@ multiplexed single cell datasets. It is built on a statistical model of tag
read counts derived from the physical mechanism of tag cross-contamination.")
(license license:cc0))))
+(define-public r-demuxmix
+ (let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
+ (revision "1"))
+ (package
+ (name "r-demuxmix")
+ (version (git-version "1.1.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/huklein/demuxmix")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
+ (properties `((upstream-name . "demuxmix")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/huklein/demuxmix")
+ (synopsis
+ "Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
+ (description
+ "This package is used for demultiplexing single-cell sequencing
+experiments of pooled cells. These cells are labeled with barcode
+oligonucleotides. The package implements methods to fit regression mixture
+models for a probabilistic classification of cells, including multiplet
+detection. Demultiplexing error rates can be estimated, and methods for
+quality control are provided.")
+ (license license:artistic2.0))))
+
(define-public gdc-client
(package
(name "gdc-client")