~ruther/guix-local

b76bf5dcd1cdc245e79d19159934c30c93692d40 — Hugo Buddelmeijer 6 months ago 08e6a0f 
gnu: python-scipy: Reduce closure size.

As documentation was not built at all, this change removes everything
requiring for to reduce the closue size.

* gnu/packages/python-science.scm (python-scipy): Adjust inputs
[arguments] <phases>: Remove 'install-doc.
[propagated-inputs]: Keep only python-numpy.
[native-inpusts]: Remove python-hypothesis, and python-pytest-cov; add
python-mpmath, python-numpydoc, python-pythran, python-rich-click,
python-threadpoolctl, and python-typing-extensions.

Fixes: guix/guix#2944.
Change-Id: I97e4914c3d705b47b276d3f88dc938f26b0d27a5
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
patch browse .tar.gz 
1 files changed, 13 insertions(+), 50 deletions(-)

M gnu/packages/python-science.scm

M gnu/packages/python-science.scm => gnu/packages/python-science.scm +13 -50
@@ 3105,53 3105,7 @@ cross-validation.")
                          (string-append
                           "import scipy; scipy.test('fast', parallel="
                           (number->string (parallel-job-count))
                           ", verbose=2)"))))))
          (add-after 'check 'install-doc
            (lambda* (#:key outputs #:allow-other-keys)
              ;; FIXME: Documentation cannot be built because it requires
              ;; a newer version of pydata-sphinx-theme, which currently
              ;; cannot build without internet access:
              ;; <https://github.com/pydata/pydata-sphinx-theme/issues/628>.
              ;; Keep the phase for easy testing.
              (let ((sphinx-build (false-if-exception
                                   (search-input-file input "bin/sphinx-build"))))
                (if sphinx-build
                    (let* ((doc (assoc-ref outputs "doc"))
                           (data (string-append doc "/share"))
                           (docdir (string-append
                                    data "/doc/"
                                    #$(package-name this-package) "-"
                                    #$(package-version this-package)))
                           (html (string-append docdir "/html")))
                      (with-directory-excursion "doc"
                        ;; Build doc.
                        (invoke "make" "html"
                                ;; Building the documentation takes a very long time.
                                ;; Parallelize it.
                                (string-append "SPHINXOPTS=-j"
                                               (number->string (parallel-job-count))))
                        ;; Install doc.
                        (mkdir-p html)
                        (copy-recursively "build/html" html)))
                    (format #t "sphinx-build not found, skipping~%"))))))))
    (propagated-inputs
     (append
       (if (supported-package? python-jupytext)  ; Depends on pandoc.
           (list python-jupytext)
           '())
       (list python-matplotlib
             python-mpmath
             python-mypy
             python-numpy
             python-numpydoc
             python-pydata-sphinx-theme
             python-pydevtool
             python-pythran
             python-rich-click
             python-sphinx
             python-threadpoolctl
             python-typing-extensions)))
    (inputs (list openblas pybind11-2.10))
                           ", verbose=2)")))))))))
    (native-inputs
     (list gfortran
           ;; XXX: Adding gfortran shadows GCC headers, causing a compilation


@@ 3162,14 3116,23 @@ cross-validation.")
           python-click
           python-cython-0
           python-doit
           python-hypothesis
           python-mpmath
           python-numpydoc
           python-pooch
           python-pycodestyle
           python-pydevtool
           python-pytest
           python-pytest-cov
           python-pytest-timeout
           python-pytest-xdist))
           python-pytest-xdist
           python-pythran
           python-rich-click
           python-threadpoolctl
           python-typing-extensions))
    (inputs
     (list openblas
           pybind11-2.10))
    (propagated-inputs
     (list python-numpy))
    (home-page "https://scipy.org/")
    (synopsis "The Scipy library provides efficient numerical routines")
    (description "The SciPy library is one of the core packages that make up