From ada8242a7198f27d04440ffbd38d26d21be2383f Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Tue, 30 Dec 2025 22:48:19 +0000 Subject: [PATCH] gnu: htseq: Update to 2.0.9. * gnu/packages/bioinformatics.scm (htseq): Update to 2.0.9. [propagated-inputs]: Remove python-matplotlib. [native-inputs]: Remove python-wheel; add python-matplotlib. Change-Id: I026cd0ecf01418b4c112b8d0f2f6c0ab709c38d7 Signed-off-by: Rutherther --- gnu/packages/bioinformatics.scm | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7f72ddf6ad3c012e96a3324aa894ee041fea9541..3a46cefacb6ab2441662d0d7189e94c463ac847f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8816,8 +8816,7 @@ HMMs).") (define-public htseq (package (name "htseq") - (version "2.0.2") - ;; Sources on pypi do not include everything needed to run the tests. + (version "2.0.9") (source (origin (method git-fetch) (uri (git-reference @@ -8826,19 +8825,18 @@ HMMs).") (file-name (git-file-name name version)) (sha256 (base32 - "1kbr4ydjjhizz6r5m3xd4f0wj7qnn8zs0vnzghhgaa0yhbya5r19")))) + "1wyv5aqdx1i48i01xnav1cvv5zjv9n4nxplcgplwzxz9pxiw3kcb")))) (build-system pyproject-build-system) (propagated-inputs - (list python-matplotlib - python-numpy + (list python-numpy python-pysam)) (native-inputs (list python-cython + python-matplotlib python-pandas python-pytest python-scipy python-setuptools - python-wheel swig)) (home-page "https://github.com/htseq") (synopsis "Framework for analyzing high-throughput sequencing data")