@@ 5268,6 5268,42 @@ between experiments, StringTie's output can be processed either by the
Cuffdiff or Ballgown programs.")
(license license:artistic2.0)))
+(define-public taxtastic
+ (package
+ (name "taxtastic")
+ (version "0.5.7")
+ ;; Versions after 0.5.4 do not appear to be distributed on PyPI so we
+ ;; download the package from GitHub.
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/fhcrc/taxtastic/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1s0h5y1lds1c40jhir5585ffm6yjyn8h5aqimpgv64rhqhfv56xx"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:python ,python-2
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (zero? (system* "python" "-m" "unittest" "discover" "-v")))))))
+ (propagated-inputs
+ `(("python-sqlalchemy" ,python2-sqlalchemy)
+ ("python-decorator" ,python2-decorator)
+ ("python-biopython" ,python2-biopython)
+ ("python-pandas" ,python2-pandas)))
+ (home-page "https://github.com/fhcrc/taxtastic")
+ (synopsis "Tools for taxonomic naming and annotation")
+ (description
+ "Taxtastic is software written in python used to build and maintain
+reference packages i.e. collections of reference trees, reference alignments,
+profiles, and associated taxonomic information.")
+ (license license:gpl3+)))
+
(define-public vcftools
(package
(name "vcftools")