~ruther/guix-local

abeb7cd9fa71b52c5c273624fa4a36bf595b7d67 — Kjartan Oli Agustsson 1 year, 12 days ago 3bb992a 
gnu: stpipeline: Run guix style

* gnu/packages/bioinformatics.scm (stpipeline): Run guix style.

Change-Id: I341e0b7adce82c079b1dcff94a2128d3e1773a4a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
patch browse .tar.gz .zip 
1 files changed, 29 insertions(+), 32 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +29 -32
@@ 11960,41 11960,38 @@ for Spatial Transcriptomics data.")
  (package
    (name "stpipeline")
    (version "1.8.1")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "stpipeline" version))
              (sha256
               (base32
                "0har2g42fvaqpiz66lincy86aj1hvwzds26kxhxfamvyvv4721wk"))))
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "stpipeline" version))
       (sha256
        (base32 "0har2g42fvaqpiz66lincy86aj1hvwzds26kxhxfamvyvv4721wk"))))
    (build-system pyproject-build-system)
    (arguments
     (list
      #:phases
      '(modify-phases %standard-phases
         (add-after 'unpack 'relax-requirements
           (lambda _
             (substitute* "requirements.txt"
               (("argparse.*") "")))))))
    (propagated-inputs
     (list htseq
           python-cython
           python-invoke
           python-numpy
           python-pandas
           python-pympler
           python-pysam
           python-regex
           python-scikit-learn
           python-scipy
           python-seaborn
           python-setuptools
           python-sqlitedict
           python-taggd
           samtools
           star))
    (native-inputs
     (list python-setuptools
           python-wheel))
      #:phases '(modify-phases %standard-phases
                  (add-after 'unpack 'relax-requirements
                    (lambda _
                      (substitute* "requirements.txt"
                        (("argparse.*")
                         "")))))))
    (propagated-inputs (list htseq
                             python-cython
                             python-invoke
                             python-numpy
                             python-pandas
                             python-pympler
                             python-pysam
                             python-regex
                             python-scikit-learn
                             python-scipy
                             python-seaborn
                             python-setuptools
                             python-sqlitedict
                             python-taggd
                             samtools
                             star))
    (native-inputs (list python-setuptools python-wheel))
    (home-page "https://github.com/SpatialTranscriptomicsResearch/st_pipeline")
    (synopsis "Pipeline for spatial mapping of unique transcripts")
    (description