From a3c54627cf6ab6f1dff294d4b2b95428d9718a7b Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Sun, 4 Jan 2026 21:24:25 +0000
Subject: [PATCH] gnu: python-pyamg: Update to 5.3.0.

* gnu/packages/python-science.scm (python-pyamg): Update to 5.3.0.
[arguments] <test-flags>: Remove local source instead in phase..
<phases>: Add 'pre-check.
[native-inputs]: Remove python-wheel.

Change-Id: I3f231c1201013b4cbc7a8fbda14937aa0685827e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
---
 gnu/packages/python-science.scm | 21 ++++++++++++---------
 1 file changed, 12 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 1455f4c347002bee2e0141ef047008d509c84634..fc9482a311b7d2f2aaadce703ae8fd5ab5f55155 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2449,7 +2449,7 @@ different units.")
 (define-public python-pyamg
   (package
     (name "python-pyamg")
-    (version "5.0.1")
+    (version "5.3.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "pyamg" version))
@@ -2471,12 +2471,10 @@ different units.")
                       "tests/bind_examples_bind.cpp"))))
               (sha256
                (base32
-                "0l3dliwynxyjvbgpmi2k8jqvkkw6fc00c8w69h6swhrkfh0ql12z"))))
+                "02w6xy3i0qcpsfc64zw8k15mi6qykq65h3d98vi9p6fdlkqx08sk"))))
     (arguments
      (list
-      #:test-flags
-      ;; Test installed package in order to find C++ modules.
-      #~(list "--pyargs" "pyamg.tests")
+      ;; tests: 40 passed, 1 skipped
       #:phases
       #~(modify-phases %standard-phases
           ;; Regenerate the autogenerated files.
@@ -2491,7 +2489,11 @@ different units.")
                   (("/usr/bin/env python3") (which "python3")))
                 (invoke "sh" "generate.sh"))
               (with-directory-excursion "pyamg/amg_core/tests"
-                (invoke "python" "bindthem.py" "bind_examples.h")))))))
+                (invoke "python" "bindthem.py" "bind_examples.h"))))
+          (add-before 'check 'pre-check
+            (lambda _
+              (copy-recursively "pyamg/tests" "tests")
+              (delete-file-recursively "pyamg"))))))
     (build-system pyproject-build-system)
     (native-inputs
      (list pybind11
@@ -2499,9 +2501,10 @@ different units.")
            python-pytest
            python-pyyaml
            python-setuptools
-           python-setuptools-scm
-           python-wheel))
-    (propagated-inputs (list python-numpy python-scipy))
+           python-setuptools-scm))
+    (propagated-inputs
+     (list python-numpy
+           python-scipy))
     (home-page "https://github.com/pyamg/pyamg")
     (synopsis "Algebraic Multigrid Solvers in Python")
     (description "PyAMG is a Python library of Algebraic Multigrid