~ruther/guix-local

9d882d2ef51804e3ddc31b09f62257a5809cb0ba — Efraim Flashner 2 years ago aa1d419
gnu: bowtie1: Enable building on more systems.

* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Add make-flag to
disable searching for cpu features on non-x86 systems.
[supported-systems]: Enable all 64-bit supported systems.

Change-Id: Ice30df945ba154e39cd58a91847329e81038a3af
1 files changed, 6 insertions(+), 3 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +6 -3
@@ 3775,14 3775,17 @@ gapped, local, and paired-end alignment modes.")
     `(#:tests? #f                      ; Tests need various perl modules
       #:test-target "simple-test"
       #:make-flags
       ,#~(list "CC=gcc" "all"
                (string-append "prefix=" #$output))
       ,#~(append #$(if (not (target-x86?))
                        #~'("POPCNT_CAPABILITY=0")
                        #~'())
                  (list "CC=gcc" "all"
                        (string-append "prefix=" #$output)))
       #:phases
       (modify-phases %standard-phases
         (delete 'configure))))
    (inputs
     (list python-wrapper tbb zlib))
    (supported-systems '("x86_64-linux"))
    (supported-systems %64bit-supported-systems)
    (home-page "https://bowtie-bio.sourceforge.net/index.shtml")
    (synopsis "Fast aligner for short nucleotide sequence reads")
    (description