From 9c6512c77e12f69a99fba2d6102c2f6add644452 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 25 Nov 2025 13:50:45 +0100
Subject: [PATCH] gnu: r-bgeecall: Update to 1.26.0.

* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.26.0.
[propagated-inputs]: Remove r-biomart; add r-annotationdbi, r-curl, r-ggplot2, r-iranges,
r-rcurl, r-readr, r-rsqlite, r-scales, r-spatstat-univar, and
r-stringr.

Change-Id: I7e4d779eb12bbbd69578c096053bd3dd4f6f74d9
---
 gnu/packages/bioconductor.scm | 16 +++++++++++++---
 1 file changed, 13 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3ca1d34c9390a3d98c9a437cd17b3131dac6a1f2..27743cc2c847fbd45758d9db76eaae848abd82bc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -27523,14 +27523,14 @@ real numbers.")
 (define-public r-bgeecall
   (package
     (name "r-bgeecall")
-    (version "1.24.0")
+    (version "1.26.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "BgeeCall" version))
        (sha256
         (base32
-         "0fjqwnaq26dzca4n3d7nsq8psim2k8vq6l6gdz11psf805k60hdl"))))
+         "1ql6id4l1qchavywbarj0c5vc8j7ars34br9wb4s66is68bb688p"))))
     (properties
      '((upstream-name . "BgeeCall")
        (updater-extra-propagated-inputs . ("kallisto"))))
@@ -27539,16 +27539,26 @@ real numbers.")
     (build-system r-build-system)
     (propagated-inputs
      (list kallisto
-           r-biomart
+           r-annotationdbi
            r-biostrings
+           r-curl
            r-data-table
            r-dplyr
            r-genomicfeatures
+           r-ggplot2
+           r-iranges
            r-jsonlite
+           r-rcurl
+           r-readr
            r-rhdf5
            r-rslurm
+           r-rsqlite
            r-rtracklayer
+           r-scales
+           r-sjmisc
            r-sjmisc
+           r-spatstat-univar
+           r-stringr
            r-txdbmaker
            r-tximport))
     (native-inputs (list r-annotationhub r-httr r-knitr r-testthat))