From 9b5ca72a37a41fe95153ce4ca8eff6e5e448e748 Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Tue, 6 Jan 2026 21:57:25 +0000 Subject: [PATCH] gnu: python-lifelines: Simplify tests. * gnu/packages/statistics.scm (python-lifelines): [arguments] : Rework skipped tests to improve determinism of them. [native-inputs]: Remove python-pytest-xdist and python-wheel; add python-jinja2. Change-Id: Ia468acbfff3714662620e1196f4ea8fe72a308df Signed-off-by: Rutherther --- gnu/packages/statistics.scm | 26 +++++++------------------- 1 file changed, 7 insertions(+), 19 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0c64e9c64e11f7a5664a64ed5803b3ed81a76ccc..b367e44ee4b5b840af88e0195ac9c7eaa676211c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1386,31 +1386,19 @@ new data from those PDFs.") (build-system pyproject-build-system) (arguments (list + ;; tests: 144 passed, 75 skipped, 1 deselected, 11 warnings #:test-flags - ;; NOTE: Tests take 15-25min to complete on 16 threads and much longer - ;; in single one, so enabling --numprocesses option. - #~(list "lifelines/tests" - "--numprocesses" (number->string (min 16 (parallel-job-count))) - "-k" (string-join - (list - ;; This accuracy test fails because 0.012 is not < 0.01. - "not test_weibull_with_delayed_entries" - ;; These checks are too expensive, last for ages. - "test_univariate_fitters_ok_if_given_timedelta" - "test_predict_methods_returns_a_scalar_or_a_array_depending_on_input" - "test_cumulative_density_ci_is_ordered_correctly" - (string-append - "test_univariate_fitters_okay_if_" - "given_boolean_col_with_object_dtype")) - " and not ")))) + ;; Tests are not deterministic and compute intense. + #~(list "--ignore=lifelines/tests/test_estimation.py" + ;; Not equal to tolerance rtol=0.0001, atol=0 + "--deselect=lifelines/tests/test_npmle.py::test_mice_scipy"))) (native-inputs (list python-dill python-flaky + python-jinja2 python-joblib python-pytest - python-pytest-xdist ;see NOTE above - python-setuptools - python-wheel)) + python-setuptools)) (propagated-inputs (list python-autograd python-autograd-gamma