~ruther/guix-local

990bac0ea5daae426801df9b64e67d51a9316d8d — Ricardo Wurmus 3 years ago b10bff6
gnu: Add r-pfamanalyzer.

* gnu/packages/bioconductor.scm (r-pfamanalyzer): New variable.
1 files changed, 23 insertions(+), 0 deletions(-)

M gnu/packages/bioconductor.scm
M gnu/packages/bioconductor.scm => gnu/packages/bioconductor.scm +23 -0
@@ 8313,6 8313,29 @@ the results is also provided.  All PCA methods make use of the same data
structure (pcaRes) to provide a common interface to the PCA results.")
    (license license:gpl3+)))

(define-public r-pfamanalyzer
  (package
    (name "r-pfamanalyzer")
    (version "1.0.1")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "pfamAnalyzeR" version))
              (sha256
               (base32
                "0zff887lc4bjrv683kqsw47vjwmf6886wybklsf2wd6hpy23mxfy"))))
    (properties `((upstream-name . "pfamAnalyzeR")))
    (build-system r-build-system)
    (propagated-inputs (list r-dplyr r-magrittr r-readr r-stringr r-tibble))
    (native-inputs (list r-knitr))
    (home-page "https://bioconductor.org/packages/pfamAnalyzeR")
    (synopsis "Identification of domain isotypes in pfam data")
    (description
     "This R package enables the user to read pfam predictions into R.  Most
human protein domains exist as multiple distinct variants termed domain
isotypes. This R package enables the identification and classification of such
domain isotypes from pfam data.")
    (license license:expat)))

;; This is a CRAN package, but it depends on a Bioconductor package:
;; r-aroma-light, r-dnacopy..
(define-public r-pscbs