~ruther/guix-local

9602e3cce95264d563804d372f44a0d88bad3e9f — Ben Woodcroft 9 years ago f803f77 
gnu: python2-dendropy: Fix tests.

* gnu/packages/bioinformatics.scm (python2-dendropy)[source]: Use unpatched
source.
[arguments]: Use nose to run tests.
[native-inputs]: Add python2-nose.
patch browse .tar.gz 
1 files changed, 18 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +18 -0
@@ 1972,7 1972,25 @@ trees (phylogenies) and characters.")
  (let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
    (package
      (inherit base)
      ;; Do not use same source as 'python-dendropy' because the patched
      ;; failing tests do not occur on Python 2.
      (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "DendroPy" (package-version base)))
         (sha256
          (base32
           "1jfz7gp18wph311w1yygbvjanb3n5mdqal439bb6myw41dwb5m63"))))
      (arguments
       `(#:python ,python-2
         #:phases
           (modify-phases %standard-phases
             (replace 'check
               ;; There is currently a test failure that only happens on some
               ;; systems, and only using "setup.py test"
               (lambda _ (zero? (system* "nosetests")))))))
      (native-inputs `(("python2-setuptools" ,python2-setuptools)
                       ("python2-nose" ,python2-nose)
                       ,@(package-native-inputs base))))))