From 8bf2be75d7d012038277914cdd434776268b95b8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 25 Nov 2025 13:50:29 +0100
Subject: [PATCH] gnu: r-graphite: Update to 1.56.0.

* gnu/packages/bioconductor.scm (r-graphite): Update to 1.56.0.
[propagated-inputs]: Add r-dir-expiry and r-lifecycle.
[native-inputs]: Add r-a4preproc and r-all.

Change-Id: I2f15d9dd8de268a8d9b50327c8d320032599b9c2
---
 gnu/packages/bioconductor.scm | 17 +++++++++++++----
 1 file changed, 13 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ea4f2542060a942ae639436cdab66bf400f65965..85169d59c3775732d20f179d935de0ef64697ccc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -24283,21 +24283,30 @@ visualize bioinformatics analyses.")
 (define-public r-graphite
   (package
     (name "r-graphite")
-    (version "1.54.0")
+    (version "1.56.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "graphite" version))
        (sha256
         (base32
-         "0d0y8i2sswfkkdi0r9r28f4f41hp7qxxf5fxml39i5119bpkzzc5"))))
+         "0481mc4h33n8kky5qph2isjibfclcc694k8pxlf6aijq6hbqxc78"))))
     (properties `((upstream-name . "graphite")))
     (build-system r-build-system)
     ;; Tests need internet access.
     (arguments (list #:tests? #false))
     (propagated-inputs
-     (list r-annotationdbi r-graph r-httr r-purrr r-rappdirs r-rlang))
-    (native-inputs (list r-checkmate
+     (list r-annotationdbi
+           r-dir-expiry
+           r-graph
+           r-httr
+           r-lifecycle
+           r-purrr
+           r-rappdirs
+           r-rlang))
+    (native-inputs (list r-a4preproc
+                         r-all
+                         r-checkmate
                          r-hgu133plus2-db
                          r-r-rsp
                          r-testthat))