@@ 2020,6 2020,57 @@ processing of CCD images built on a framework to provide error propagation and
bad pixel tracking throughout the reduction process.")
(license license:bsd-3)))
+(define-public python-cdflib
+ (package
+ (name "python-cdflib")
+ (version "1.3.2")
+ (source
+ (origin
+ (method git-fetch) ; no tests in PyPI release
+ (uri (git-reference
+ (url "https://github.com/MAVENSDC/cdflib")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0g723s5xg7vd37vlbjpgpiljd3vxwccslwzcf619zvdnc2xbcw2c"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'set-env-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
+ #$version)))
+ (add-before 'check 'set-home-env
+ (lambda _
+ (setenv "HOME" (getcwd)))))))
+ (native-inputs
+ (list python-astropy
+ python-hypothesis
+ python-pytest
+ python-pytest-cov
+ python-pytest-remotedata
+ python-setuptools
+ python-setuptools-scm
+ python-xarray
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy))
+ (home-page "https://github.com/MAVENSDC/cdflib")
+ (synopsis "Python library to deal with NASA's CDF astronmical data format")
+ (description "This package provides a Python @acronym{CDF, Computable
+Document Format} reader toolkit.
+It provides the following functionality:
+@itemize
+@item Ability to read variables and attributes from CDF files
+@item Writes CDF version 3 files
+@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common
+time formats
+@item Can convert CDF files into XArray Dataset objects and vice versa,
+attempting to maintain ISTP compliance
+@end itemize")
+ (license license:expat)))
+
(define-public python-coolest
(package
(name "python-coolest")
@@ 2089,6 2140,53 @@ lens models possibly obtained from different modeling codes.")
cosmological parameters e.g. redshift or luminosity-distance.")
(license license:expat)))
+(define-public python-crds
+ (package
+ (name "python-crds")
+ (version "12.0.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "crds" version))
+ (sha256
+ (base32 "09kdpaywj88n31jard4wbqmb9132qf6fk0ar2z6ca9vswavivfk8"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and
+ ;; additional test data. See:
+ ;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache
+ #:tests? #f))
+ (propagated-inputs
+ (list python-asdf
+ python-astropy
+ python-boto3
+ python-filelock
+ python-numpy
+ python-parsley
+ python-pysynphot
+ python-roman-datamodels
+ python-stsynphot
+ python-requests))
+ (native-inputs
+ (list python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (home-page "https://hst-crds.stsci.edu")
+ (synopsis "Calibration Reference Data System for HST and JWST")
+ (description
+ "CRDS is a package used for working with astronomical reference files for
+the HST and JWST telescopes. CRDS is useful for performing various operations
+on reference files or reference file assignment rules. CRDS is used to
+assign, check, and compare reference files and rules, and also to predict
+those datasets which should potentially be reprocessed due to changes in
+reference files or assignment rules. CRDS has versioned rules which define
+the assignment of references for each type and instrument configuration. CRDS
+has web sites corresponding to each project @url{http://hst-crds.stsci.edu} or
+@url{https://jwst-crds.stsci.edu/} which record information about reference
+files and provide related services.")
+ (license license:bsd-3)))
+
(define-public python-czml3
(package
(name "python-czml3")
@@ 2167,6 2265,52 @@ mapping by using a Python callback. Switching to using an array allowed the
code to be greatly simplified.")
(license license:bsd-3)))
+(define-public python-drms
+ (package
+ (name "python-drms")
+ (version "0.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "drms" version))
+ (sha256
+ (base32 "19lqy510d7iyxfz445h2rn4d0rvmd4d3lnjmvbkvv270ckpfw09f"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-astropy python-pytest-astropy python-setuptools-scm))
+ (propagated-inputs
+ (list python-numpy python-pandas))
+ (home-page "https://sunpy.org")
+ (synopsis "Access astronomical HMI, AIA and MDI data with Python")
+ (description
+ "DRMS module provides an easy-to-use interface for accessing HMI, AIA and
+MDI data with Python. It uses the publicly accessible
+JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be
+used with local NetDRMS sites.")
+ (license license:bsd-2)))
+
+(define-public python-dust-extinction
+ (package
+ (name "python-dust-extinction")
+ (version "1.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "dust_extinction" version))
+ (sha256
+ (base32 "0f0g6gh4kj83xfv0cdp30dahs80pnhsj7c6ryz3f59qf6d5zqard"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-astropy python-scipy))
+ (native-inputs
+ (list python-pytest-astropy))
+ (home-page "http://dust-extinction.readthedocs.io/")
+ (synopsis "Interstellar Dust Extinction Models")
+ (description
+ "This package provides astronomical interstellar dust extinction curves
+implemented using the astropy.modeling framework.")
+ (license license:bsd-3)))
+
(define-public python-ephem
(package
(name "python-ephem")
@@ 3170,115 3314,6 @@ instruments.")
"This package provides an image processing toolbox for Solar Physics.")
(license license:bsd-2)))
-(define-public sextractor
- (package
- (name "sextractor")
- (version "2.28.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/astromatic/sextractor")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j"))))
- (build-system gnu-build-system)
- ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
- ;; due to missing shared library which required on configure phase. Switch
- ;; build to use `openblas' instead. It requires FFTW with single precision
- ;; `fftwf'.
- (arguments
- (list
- #:configure-flags
- #~(list
- "--enable-openblas"
- (string-append "--with-cfitsio-incdir="
- #$(this-package-input "cfitsio") "/include")
- (string-append "--with-cfitsio-libdir="
- #$(this-package-input "cfitsio") "/lib")
- (string-append "--with-fftw-incdir="
- #$(this-package-input "fftwf") "/include")
- (string-append "--with-fftw-libdir="
- #$(this-package-input "fftwf") "/lib")
- (string-append "--with-openblas-incdir="
- #$(this-package-input "openblas") "/include")
- (string-append "--with-openblas-libdir="
- #$(this-package-input "openblas") "/lib"))))
- (native-inputs
- (list autoconf automake libtool))
- (inputs
- (list cfitsio fftwf openblas))
- (home-page "https://www.astromatic.net/software/sextractor")
- (synopsis "Extract catalogs of sources from astronomical images")
- (description
- "SExtractor is a program that builds a catalogue of objects from an
-astronomical image. Although it is particularly oriented towards reduction of
-large scale galaxy-survey data, it can perform reasonably well on moderately
-crowded star fields.")
- (license license:gpl3+)))
-
-(define-public stackistry
- (package
- (name "stackistry")
- (version "0.3.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/GreatAttractor/stackistry")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq"))))
- (build-system gnu-build-system)
- (arguments
- (list
- #:tests? #f ; No test target
- #:make-flags
- #~(list
- (string-append
- "SKRY_INCLUDE_PATH=" #$(this-package-input "libskry") "/include")
- (string-append
- "SKRY_LIB_PATH=-L" #$(this-package-input "libskry") "/lib")
- (string-append
- "LIBAV_INCLUDE_PATH=" #$(this-package-input "ffmpeg") "/include"))
- #:phases
- #~(modify-phases %standard-phases
- ;; no configure and tests are provided
- (delete 'configure)
- (add-after 'unpack 'fix-paths
- (lambda _
- (substitute* "src/main.cpp"
- (("\"\\.\\.\", \"lang\"")
- "\"../share/stackistry\", \"lang\""))
- (substitute* "src/utils.cpp"
- (("\"\\.\\.\", \"icons\"")
- "\"../share/stackistry\", \"icons\""))))
- (replace 'install
- ;; The Makefile lacks an ‘install’ target.
- (lambda _
- (let* ((out #$output)
- (bin (string-append out "/bin"))
- (icons (string-append out "/share/stackistry/icons"))
- (lang (string-append out "/share/stackistry/lang")))
- (copy-recursively "bin" bin)
- (copy-recursively "icons" icons)
- (copy-recursively "lang" lang)))))))
- (native-inputs
- (list pkg-config))
- (inputs
- (list gtkmm-3 libskry ffmpeg-4))
- (home-page "https://github.com/GreatAttractor/stackistry")
- (synopsis "Astronomical lucky imaging/image stacking tool")
- (description
- "Stackistry implements the lucky imaging principle of astronomical
-imaging: creating a high-quality still image out of a series of many (possibly
-thousands) low quality ones (blurred, deformed, noisy). The resulting image
-stack typically requires post-processing, including sharpening (e.g. via
-deconvolution). Such post-processing is not performed by Stackistry.")
- (license license:gpl3+)))
-
;; XXX: Upgrading to the latest version requires Python3.11+ and fresh
;; versions of numpy, PyYAML, packaging, Pandas and matplotlib, see
;; <https://github.com/astropy/astropy/blob/v7.0.0/CHANGES.rst
@@ 3661,57 3696,6 @@ be as fast as possible so some of the readability has been sacrificed,
specifically in the C code.")
(license license:bsd-3)))
-(define-public python-cdflib
- (package
- (name "python-cdflib")
- (version "1.3.2")
- (source
- (origin
- (method git-fetch) ; no tests in PyPI release
- (uri (git-reference
- (url "https://github.com/MAVENSDC/cdflib")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0g723s5xg7vd37vlbjpgpiljd3vxwccslwzcf619zvdnc2xbcw2c"))))
- (build-system pyproject-build-system)
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (add-before 'build 'set-env-version
- (lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
- #$version)))
- (add-before 'check 'set-home-env
- (lambda _
- (setenv "HOME" (getcwd)))))))
- (native-inputs
- (list python-astropy
- python-hypothesis
- python-pytest
- python-pytest-cov
- python-pytest-remotedata
- python-setuptools
- python-setuptools-scm
- python-xarray
- python-wheel))
- (propagated-inputs
- (list python-numpy))
- (home-page "https://github.com/MAVENSDC/cdflib")
- (synopsis "Python library to deal with NASA's CDF astronmical data format")
- (description "This package provides a Python @acronym{CDF, Computable
-Document Format} reader toolkit.
-It provides the following functionality:
-@itemize
-@item Ability to read variables and attributes from CDF files
-@item Writes CDF version 3 files
-@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common
-time formats
-@item Can convert CDF files into XArray Dataset objects and vice versa,
-attempting to maintain ISTP compliance
-@end itemize")
- (license license:expat)))
-
(define-public python-ci-watson
(package
(name "python-ci-watson")
@@ 3789,99 3773,6 @@ monochromatic sequential colormaps like @code{blue}, @code{green}, and
@code{red}, and others (@code{algae}, @code{pastel}, and @code{xray}).")
(license license:bsd-3)))
-(define-public python-crds
- (package
- (name "python-crds")
- (version "12.0.8")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "crds" version))
- (sha256
- (base32 "09kdpaywj88n31jard4wbqmb9132qf6fk0ar2z6ca9vswavivfk8"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- ;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and
- ;; additional test data. See:
- ;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache
- #:tests? #f))
- (propagated-inputs
- (list python-asdf
- python-astropy
- python-boto3
- python-filelock
- python-numpy
- python-parsley
- python-pysynphot
- python-roman-datamodels
- python-stsynphot
- python-requests))
- (native-inputs
- (list python-setuptools
- python-setuptools-scm
- python-wheel))
- (home-page "https://hst-crds.stsci.edu")
- (synopsis "Calibration Reference Data System for HST and JWST")
- (description
- "CRDS is a package used for working with astronomical reference files for
-the HST and JWST telescopes. CRDS is useful for performing various operations
-on reference files or reference file assignment rules. CRDS is used to
-assign, check, and compare reference files and rules, and also to predict
-those datasets which should potentially be reprocessed due to changes in
-reference files or assignment rules. CRDS has versioned rules which define
-the assignment of references for each type and instrument configuration. CRDS
-has web sites corresponding to each project @url{http://hst-crds.stsci.edu} or
-@url{https://jwst-crds.stsci.edu/} which record information about reference
-files and provide related services.")
- (license license:bsd-3)))
-
-(define-public python-drms
- (package
- (name "python-drms")
- (version "0.8.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "drms" version))
- (sha256
- (base32 "19lqy510d7iyxfz445h2rn4d0rvmd4d3lnjmvbkvv270ckpfw09f"))))
- (build-system pyproject-build-system)
- (native-inputs
- (list python-astropy python-pytest-astropy python-setuptools-scm))
- (propagated-inputs
- (list python-numpy python-pandas))
- (home-page "https://sunpy.org")
- (synopsis "Access astronomical HMI, AIA and MDI data with Python")
- (description
- "DRMS module provides an easy-to-use interface for accessing HMI, AIA and
-MDI data with Python. It uses the publicly accessible
-JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be
-used with local NetDRMS sites.")
- (license license:bsd-2)))
-
-(define-public python-dust-extinction
- (package
- (name "python-dust-extinction")
- (version "1.5")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "dust_extinction" version))
- (sha256
- (base32 "0f0g6gh4kj83xfv0cdp30dahs80pnhsj7c6ryz3f59qf6d5zqard"))))
- (build-system pyproject-build-system)
- (propagated-inputs
- (list python-astropy python-scipy))
- (native-inputs
- (list python-pytest-astropy))
- (home-page "http://dust-extinction.readthedocs.io/")
- (synopsis "Interstellar Dust Extinction Models")
- (description
- "This package provides astronomical interstellar dust extinction curves
-implemented using the astropy.modeling framework.")
- (license license:bsd-3)))
-
(define-public python-hvpy
(package
(name "python-hvpy")
@@ 6882,6 6773,54 @@ convenient access to metadata from a regular web browser
@end itemize")
(license license:gpl3+)))
+(define-public sextractor
+ (package
+ (name "sextractor")
+ (version "2.28.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/astromatic/sextractor")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j"))))
+ (build-system gnu-build-system)
+ ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
+ ;; due to missing shared library which required on configure phase. Switch
+ ;; build to use `openblas' instead. It requires FFTW with single precision
+ ;; `fftwf'.
+ (arguments
+ (list
+ #:configure-flags
+ #~(list
+ "--enable-openblas"
+ (string-append "--with-cfitsio-incdir="
+ #$(this-package-input "cfitsio") "/include")
+ (string-append "--with-cfitsio-libdir="
+ #$(this-package-input "cfitsio") "/lib")
+ (string-append "--with-fftw-incdir="
+ #$(this-package-input "fftwf") "/include")
+ (string-append "--with-fftw-libdir="
+ #$(this-package-input "fftwf") "/lib")
+ (string-append "--with-openblas-incdir="
+ #$(this-package-input "openblas") "/include")
+ (string-append "--with-openblas-libdir="
+ #$(this-package-input "openblas") "/lib"))))
+ (native-inputs
+ (list autoconf automake libtool))
+ (inputs
+ (list cfitsio fftwf openblas))
+ (home-page "https://www.astromatic.net/software/sextractor")
+ (synopsis "Extract catalogs of sources from astronomical images")
+ (description
+ "SExtractor is a program that builds a catalogue of objects from an
+astronomical image. Although it is particularly oriented towards reduction of
+large scale galaxy-survey data, it can perform reasonably well on moderately
+crowded star fields.")
+ (license license:gpl3+)))
+
(define-public sgp4
;; Version tag v1.0 is dated to <2021-01-11>, use the lates commit instead.
(let ((commit "6a448b4850e5fbf8c1ca03bb5f6013a9fdc1fd91")
@@ 7083,6 7022,67 @@ astrophysics. It uses a command-line menu but data can be manipulated
interactively in the plotting window.")
(license license:gpl2+)))
+(define-public stackistry
+ (package
+ (name "stackistry")
+ (version "0.3.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/GreatAttractor/stackistry")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:tests? #f ; No test target
+ #:make-flags
+ #~(list
+ (string-append
+ "SKRY_INCLUDE_PATH=" #$(this-package-input "libskry") "/include")
+ (string-append
+ "SKRY_LIB_PATH=-L" #$(this-package-input "libskry") "/lib")
+ (string-append
+ "LIBAV_INCLUDE_PATH=" #$(this-package-input "ffmpeg") "/include"))
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; no configure and tests are provided
+ (delete 'configure)
+ (add-after 'unpack 'fix-paths
+ (lambda _
+ (substitute* "src/main.cpp"
+ (("\"\\.\\.\", \"lang\"")
+ "\"../share/stackistry\", \"lang\""))
+ (substitute* "src/utils.cpp"
+ (("\"\\.\\.\", \"icons\"")
+ "\"../share/stackistry\", \"icons\""))))
+ (replace 'install
+ ;; The Makefile lacks an ‘install’ target.
+ (lambda _
+ (let* ((out #$output)
+ (bin (string-append out "/bin"))
+ (icons (string-append out "/share/stackistry/icons"))
+ (lang (string-append out "/share/stackistry/lang")))
+ (copy-recursively "bin" bin)
+ (copy-recursively "icons" icons)
+ (copy-recursively "lang" lang)))))))
+ (native-inputs
+ (list pkg-config))
+ (inputs
+ (list gtkmm-3 libskry ffmpeg-4))
+ (home-page "https://github.com/GreatAttractor/stackistry")
+ (synopsis "Astronomical lucky imaging/image stacking tool")
+ (description
+ "Stackistry implements the lucky imaging principle of astronomical
+imaging: creating a high-quality still image out of a series of many (possibly
+thousands) low quality ones (blurred, deformed, noisy). The resulting image
+stack typically requires post-processing, including sharpening (e.g. via
+deconvolution). Such post-processing is not performed by Stackistry.")
+ (license license:gpl3+)))
+
(define-public stellarium
(package
(name "stellarium")