gnu: python-pandera: Update to 0.26.1. * gnu/packages/python-science.scm (python-pandera): Update to 0.26.1. [source]: Switch to url-fetch, PyPI archive provides tests and build successfully while git version missed a lot of sub module after install. [arguments] <test-flags>: Rework skipped tests and ignored test files. [inputs]: Add python-dask, python-distributed, python-geopandas, python-hypothesis, python-modin, python-numpy, python-pandas, python-scipy, and python-shapely. [propagated-inputs]: Remove python-hypothesis-next, python-modin, python-multimethod, python-numpy, python-pandas, python-pandas-stubs, python-scipy, and python-wrapt; add python-typing-extensions. [native-inputs]: Remove python-dask, python-fastapi, python-geopandas, python-pyarrow, python-sphinx, and python-wheel; add python-joblib and python-setuptools-scm. Change-Id: I376f11e39c47875a5a70ee5f7d4653dd77403e28
1 files changed, 56 insertions(+), 60 deletions(-) M gnu/packages/python-science.scm
M gnu/packages/python-science.scm => gnu/packages/python-science.scm +56 -60
@@ 3853,76 3853,72 @@ idea of the remaining amount of computation to be done.") (define-public python-pandera (package (name "python-pandera") ;; FIXME: The latest version requires hypothesis >= 6.92.7, which can't be ;; picked from python-hypothesis-next for some reason. (version "0.18.0") (version "0.26.1") (source (origin ;; No tests in the PyPI tarball. (method git-fetch) (uri (git-reference (url "https://github.com/unionai-oss/pandera") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (method url-fetch) (uri (pypi-uri "pandera" version)) (sha256 (base32 "14b5aij5zjkwvsimg0v00qvp59mhhq7ljim4qghcn432vkg9gh47")))) (base32 "10px2wy3rb8gg2jyry8962yrd0m3jq88wgjcpyrk23bp55j5m9c1")))) (build-system pyproject-build-system) (arguments (list ;; tests: 3093 passed, 48 skipped, 21 xfailed, 8232 warnings #:test-flags #~(list "--numprocesses" (number->string (min 8 (parallel-job-count))) ;; With higher threads count tests randomly fail during collection. #~(list "--numprocesses" (number->string (min 4 (parallel-job-count))) ;; TODO: Ignore tests for not packaged python-ibis-framework, ;; python-polars, and python-pyspark. "--ignore=tests/ibis" "--ignore=tests/polars" "--ignore=tests/pyspark" "-k" (string-join ;; Failed: DID NOT RAISE <class 'pandera.errors.SchemaError'> (list "not test_from_records_validates_the_schema" "test_init_pandas_dataframe_errors" "test_schema_dtype_crs_without_coerce" "test_schema_from_dataframe" "test_schema_model" "test_validate_coerce_on_init" ;; multimethod.DispatchError: ('str_length: 0 ;; methods found', (<class ;; 'pandas.core.series.Series'>, <class 'NoneType'>, ;; <class 'int'>), []) "test_succeeding" "test_failing" "test_failing_with_none" ;; pandera.errors.SchemaError: Error while executing ;; check function: KeyError("foo") "test_check_groups" ;; [pandas_series.py-plugin_mypy.ini-expected_errors13] ;; - assert 1 == 2 "test_pandas_stubs_false_positives" ;; TypeError: type 'Series' is not subscriptable "test_pandas_modules_importable") ;; Network access is required. (list "not test_items_endpoint" "test_transactions_endpoint" "test_upload_file_endpoint" ;; AssertionError: assert dtype('bool') == 'object' "test_index_dtypes[dask-Index-True-bool]" "test_index_dtypes[dask-Index-False-bool]" ;; TypeError: __class__ assignment: 'GeoDataFrame' ;; object layout differs from 'DataFrame' "test_schema_model[data0-True]" "test_schema_from_dataframe[data1-True]" "test_schema_no_geometry") " and not ")))) ;; Pandera comes with a lot of extras. We test as many as possible, but do ;; not include all of them in the propagated-inputs. Currently, we have to ;; skip the pyspark and io tests due to missing packages python-pyspark ;; and python-frictionless. (propagated-inputs (list python-hypothesis-next ;strategies extra python-modin python-multimethod python-numpy python-packaging python-pandas python-pandas-stubs ;mypy extra python-pydantic-2 python-scipy ;hypotheses extra python-typeguard python-typing-inspect python-wrapt)) (native-inputs (list python-dask ;dask extra python-fastapi ;fastapi extra python-geopandas ;geopandas extra python-pyarrow ;needed to run fastapi tests python-pytest python-pytest-asyncio python-pytest-xdist python-setuptools python-sphinx python-uvicorn ;needed to run fastapi tests python-wheel)) (native-inputs (list python-joblib python-pytest python-pytest-asyncio python-pytest-xdist python-setuptools python-setuptools-scm python-uvicorn)) (inputs ;; [optional] ;; Pandera comes with a lot of extras. We test as many as possible, but do ;; not include all of them in the propagated-inputs. Currently, we have to ;; skip the pyspark and io tests due to missing packages python-pyspark ;; and python-frictionless. (list python-dask python-distributed python-geopandas python-hypothesis ;; python-ibis-framework ;missing from Guix python-modin python-numpy python-pandas ;; python-polars ;missing from Guix ;; python-pyspark ;missing from Guix ;; python-ray ;missing from Guix python-scipy python-shapely)) (propagated-inputs (list python-packaging python-pydantic-2 python-typeguard python-typing-extensions python-typing-inspect)) (home-page "https://github.com/unionai-oss/pandera") (synopsis "Perform data validation on dataframe-like objects") (description